Variant report

Variant	rs1284960
Chromosome Location	chr6:45172186-45172187
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:45170143..45173003-chr6:45173758..45175670,2	MCF-7	breast:
2	chr6:45171517..45174411-chr6:45178235..45180217,2	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs12526649	1.00[YRI][hapmap]
rs12529907	1.00[YRI][hapmap]
rs1284962	1.00[YRI][hapmap]
rs1284986	0.83[YRI][hapmap]
rs1284990	0.83[YRI][hapmap]
rs1285002	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs1285005	0.83[YRI][hapmap]
rs1285006	1.00[YRI][hapmap]
rs1285007	0.83[YRI][hapmap]
rs1285009	1.00[YRI][hapmap]
rs1285018	1.00[AMR][1000 genomes]
rs1285024	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs13211006	0.83[YRI][hapmap]
rs1324535	1.00[YRI][hapmap]
rs1324541	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs16873022	1.00[AMR][1000 genomes]
rs1748233	0.83[YRI][hapmap]
rs1886344	1.00[AMR][1000 genomes]
rs2057552	0.83[YRI][hapmap]
rs4330533	1.00[AMR][1000 genomes]
rs4521587	0.83[YRI][hapmap]
rs4714840	1.00[AMR][1000 genomes]
rs55701611	1.00[AMR][1000 genomes]
rs55951053	1.00[AMR][1000 genomes]
rs58861889	1.00[AMR][1000 genomes]
rs59029804	1.00[AMR][1000 genomes]
rs60512318	1.00[AMR][1000 genomes]
rs6458432	1.00[YRI][hapmap]
rs6909856	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs6927456	1.00[AMR][1000 genomes]
rs6930090	1.00[AMR][1000 genomes]
rs6935969	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs6936475	0.83[YRI][hapmap]
rs73735303	1.00[AMR][1000 genomes]
rs73735342	1.00[AMR][1000 genomes]
rs73735343	1.00[AMR][1000 genomes]
rs73735361	1.00[AMR][1000 genomes]
rs73735389	1.00[AMR][1000 genomes]
rs73735398	1.00[AMR][1000 genomes]
rs7745506	0.83[YRI][hapmap]
rs7747550	1.00[AMR][1000 genomes]
rs7757676	0.83[YRI][hapmap]
rs7771402	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs912548	1.00[AMR][1000 genomes]
rs9472442	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1024370	chr6:44878053-45251451	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv885864	chr6:44890760-45198796	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	nsv492309	chr6:45020402-45233484	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1032906	chr6:45069368-45212863	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1028068	chr6:45169010-45246577	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45169200-45174400	Weak transcription	HepG2	liver
2	chr6:45171800-45173200	Weak transcription	Dnd41	blood

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