Variant report

Variant	rs1886344
Chromosome Location	chr6:45182034-45182035
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:45160972..45165246-chr6:45178939..45182549,3	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1284960	1.00[AMR][1000 genomes]
rs1284962	0.85[AFR][1000 genomes]
rs1285002	1.00[AMR][1000 genomes]
rs1285018	1.00[AMR][1000 genomes]
rs1285024	1.00[AMR][1000 genomes]
rs2396426	0.90[AFR][1000 genomes]
rs4330533	1.00[AMR][1000 genomes]
rs4714840	1.00[AMR][1000 genomes]
rs55701611	1.00[AMR][1000 genomes]
rs55951053	1.00[AMR][1000 genomes]
rs58861889	1.00[AMR][1000 genomes]
rs59029804	1.00[AMR][1000 genomes]
rs60512318	1.00[AMR][1000 genomes]
rs6458432	0.90[AFR][1000 genomes]
rs6909856	1.00[AMR][1000 genomes]
rs6927456	1.00[AMR][1000 genomes]
rs6930090	1.00[AMR][1000 genomes]
rs6935969	1.00[AMR][1000 genomes]
rs73735303	1.00[AMR][1000 genomes]
rs73735342	1.00[AMR][1000 genomes]
rs73735343	1.00[AMR][1000 genomes]
rs73735361	1.00[AMR][1000 genomes]
rs73735389	1.00[AMR][1000 genomes]
rs73735398	1.00[AMR][1000 genomes]
rs7747550	1.00[AMR][1000 genomes]
rs7771402	1.00[AMR][1000 genomes]
rs912548	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1024370	chr6:44878053-45251451	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv885864	chr6:44890760-45198796	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	nsv492309	chr6:45020402-45233484	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1032906	chr6:45069368-45212863	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1028068	chr6:45169010-45246577	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45178200-45182200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr6:45179800-45182400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:45179800-45182600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr6:45180000-45182600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr6:45180200-45182400	Enhancers	Dnd41	blood
6	chr6:45180200-45182800	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr6:45181000-45182400	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr6:45181000-45182600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr6:45181400-45182600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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