Variant report

Variant	rs4330533
Chromosome Location	chr6:45218748-45218749
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CLIC5-3	chr6:45218692-45218873	NONHSAT112976

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1284960	1.00[AMR][1000 genomes]
rs1285002	1.00[AMR][1000 genomes]
rs1285018	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1285024	1.00[AMR][1000 genomes]
rs1886344	1.00[AMR][1000 genomes]
rs4714840	1.00[AMR][1000 genomes]
rs55701611	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55951053	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58861889	1.00[AMR][1000 genomes]
rs59029804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60512318	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6909856	1.00[AMR][1000 genomes]
rs6927456	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6930090	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6935969	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73735303	1.00[AMR][1000 genomes]
rs73735342	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73735343	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73735361	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73735389	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73735398	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73737411	0.87[AFR][1000 genomes]
rs73737414	0.87[AFR][1000 genomes]
rs73737415	0.87[AFR][1000 genomes]
rs7760251	0.87[AFR][1000 genomes]
rs7771402	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs912548	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1024370	chr6:44878053-45251451	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv492309	chr6:45020402-45233484	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1028068	chr6:45169010-45246577	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv2763550	chr6:45186825-45275593	Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv830652	chr6:45187467-45328983	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45211400-45220200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:45213800-45221200	Weak transcription	Fetal Intestine Small	intestine
3	chr6:45218600-45239000	Weak transcription	Dnd41	blood

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