Variant report

Variant	rs6909856
Chromosome Location	chr6:45122123-45122124
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:45120420..45122464-chr6:45122631..45125594,2	K562	blood:
2	chr6:45117043..45119503-chr6:45122120..45124121,2	K562	blood:
3	chr6:45119653..45122627-chr6:45134013..45136661,2	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs12526649	0.83[YRI][hapmap]
rs12529907	1.00[YRI][hapmap]
rs1284960	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs1284986	1.00[YRI][hapmap]
rs1284990	1.00[YRI][hapmap]
rs1285002	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1285005	1.00[YRI][hapmap]
rs1285006	1.00[YRI][hapmap]
rs1285011	1.00[YRI][hapmap]
rs1285018	1.00[AMR][1000 genomes]
rs1285024	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1285029	1.00[YRI][hapmap]
rs13211006	1.00[YRI][hapmap]
rs16872990	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16873022	1.00[AMR][1000 genomes]
rs1748233	0.85[YRI][hapmap]
rs1886344	1.00[AMR][1000 genomes]
rs2057552	0.85[YRI][hapmap]
rs4330533	1.00[AMR][1000 genomes]
rs4521587	0.85[YRI][hapmap]
rs4714840	1.00[AMR][1000 genomes]
rs511167	1.00[AMR][1000 genomes]
rs55701611	1.00[AMR][1000 genomes]
rs55951053	1.00[AMR][1000 genomes]
rs588291	1.00[AMR][1000 genomes]
rs58861889	1.00[AMR][1000 genomes]
rs59029804	1.00[AMR][1000 genomes]
rs609243	1.00[AMR][1000 genomes]
rs6458432	0.83[YRI][hapmap]
rs6927456	1.00[AMR][1000 genomes]
rs6936475	0.85[YRI][hapmap]
rs73735303	1.00[AMR][1000 genomes]
rs73735342	1.00[AMR][1000 genomes]
rs73735343	1.00[AMR][1000 genomes]
rs73735361	1.00[AMR][1000 genomes]
rs73735389	1.00[AMR][1000 genomes]
rs7745506	1.00[YRI][hapmap]
rs7747550	1.00[AMR][1000 genomes]
rs7757676	0.85[YRI][hapmap]
rs7771402	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs912548	1.00[AMR][1000 genomes]
rs9472442	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1024370	chr6:44878053-45251451	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv885864	chr6:44890760-45198796	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1023018	chr6:44925393-45152912	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv538212	chr6:44925393-45152912	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1026728	chr6:45001948-45126730	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv538213	chr6:45001948-45126730	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv492309	chr6:45020402-45233484	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
10	nsv1032906	chr6:45069368-45212863	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45121200-45122200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:45121800-45122600	Genic enhancers	Dnd41	blood
3	chr6:45122000-45122400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr6:45122000-45125000	Enhancers	Primary T cells from cord blood	blood

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