Variant report

Variant	rs1285019
Chromosome Location	chr6:45167672-45167673
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MBD4	chr6:45167274-45167926	HepG2	liver:	n/a	n/a
2	HNF4A	chr6:45167316-45167797	HepG2	liver:	n/a	n/a
3	ARID3A	chr6:45166970-45168751	HepG2	liver:	n/a	chr6:45167947-45167963 chr6:45168678-45168694
4	RAD21	chr6:45167322-45167827	HepG2	liver:	n/a	n/a
5	HDAC2	chr6:45167348-45167766	HepG2	liver:	n/a	chr6:45167464-45167478 chr6:45167539-45167553
6	EP300	chr6:45167314-45167828	HepG2	liver:	n/a	n/a
7	MYBL2	chr6:45167171-45167921	HepG2	liver:	n/a	n/a
8	TCF7L2	chr6:45167304-45167875	HepG2	liver:	n/a	n/a
9	GATA3	chr6:45167571-45167818	SH-SY5Y	brain:	n/a	n/a
10	NFIC	chr6:45167144-45167965	HepG2	liver:	n/a	n/a
11	FOXA1	chr6:45167287-45167845	HepG2	liver:	n/a	n/a
12	HNF4G	chr6:45167403-45167722	HepG2	liver:	n/a	chr6:45167563-45167578
13	NFIC	chr6:45167347-45167733	HepG2	liver:	n/a	n/a
14	TEAD4	chr6:45167173-45167925	HepG2	liver:	n/a	n/a
15	HNF4A	chr6:45167384-45167683	HepG2	liver:	n/a	n/a
16	MYBL2	chr6:45167240-45167783	HepG2	liver:	n/a	n/a
17	SP1	chr6:45167253-45167773	HepG2	liver:	n/a	n/a
18	CUX1	chr6:45167567-45167681	GM12878	blood:	n/a	n/a
19	HDAC2	chr6:45167318-45167819	HepG2	liver:	n/a	chr6:45167464-45167478 chr6:45167539-45167553
20	FOXA2	chr6:45167382-45167780	HepG2	liver:	n/a	n/a
21	EP300	chr6:45167364-45167786	HepG2	liver:	n/a	n/a
22	FOXA1	chr6:45167218-45167881	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
MIR586	TF binding region

Extended variants
information (count: 293 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:287)

rs_ID	r²[population]
rs1023089	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1023090	0.88[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1023091	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs1028944	0.81[CHB][hapmap];0.80[CHD][hapmap];0.88[JPT][hapmap]
rs1041332	0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.84[MKK][hapmap];0.84[TSI][hapmap];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10456552	0.82[ASN][1000 genomes]
rs1080415	0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10807318	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10807319	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10807320	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10948198	0.89[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10948222	0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10948229	0.84[ASN][1000 genomes]
rs1159131	0.83[CHB][hapmap];0.85[CHD][hapmap];0.94[JPT][hapmap]
rs11964325	0.81[ASW][hapmap];0.88[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.84[MEX][hapmap];0.91[TSI][hapmap]
rs11966936	0.89[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs11968042	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12190261	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12194311	0.82[ASN][1000 genomes]
rs12199720	0.84[ASN][1000 genomes]
rs12204678	0.92[ASN][1000 genomes]
rs12205071	1.00[ASW][hapmap];0.92[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];0.84[MEX][hapmap];0.91[TSI][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12205274	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12205312	0.80[ASN][1000 genomes]
rs12208023	1.00[ASW][hapmap];0.92[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.84[MEX][hapmap];0.84[MKK][hapmap];0.91[TSI][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12208483	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12208924	1.00[ASW][hapmap];0.96[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.84[MEX][hapmap];0.95[MKK][hapmap];0.98[TSI][hapmap];0.89[YRI][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12209727	0.85[CHD][hapmap];0.81[MKK][hapmap];0.87[TSI][hapmap]
rs12524270	0.87[CHB][hapmap];0.90[CHD][hapmap];0.88[JPT][hapmap]
rs12524323	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12526649	0.87[CHB][hapmap];0.88[JPT][hapmap]
rs12526807	0.81[ASN][1000 genomes]
rs12527743	0.82[ASN][1000 genomes]
rs12528232	0.81[CHB][hapmap];0.81[CHD][hapmap];0.88[JPT][hapmap]
rs12528762	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs12529295	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs12529490	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes]
rs12529946	0.91[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.83[MEX][hapmap];0.84[MKK][hapmap];0.98[TSI][hapmap];0.83[YRI][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12529990	0.87[CHB][hapmap];0.88[JPT][hapmap]
rs12530207	0.87[CHB][hapmap];0.90[CHD][hapmap];0.88[JPT][hapmap]
rs12662272	0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs12662685	0.87[CHB][hapmap];0.84[CHD][hapmap];0.88[JPT][hapmap]
rs12663469	0.87[CHB][hapmap];0.88[JPT][hapmap]
rs1284955	0.87[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs1284961	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1284962	0.87[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs1284964	0.87[CHB][hapmap];0.90[CHD][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs1284965	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1284967	0.87[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs1284969	0.85[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1284972	0.87[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1284973	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1284975	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1284980	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1284982	0.81[ASW][hapmap];0.91[CEU][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1284983	0.89[CEU][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1284986	0.87[CHB][hapmap];0.88[JPT][hapmap]
rs1284987	1.00[ASW][hapmap];0.92[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.84[MEX][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap]
rs1284988	0.89[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1284992	1.00[ASW][hapmap];0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];0.87[MEX][hapmap];0.86[MKK][hapmap];0.93[TSI][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1284993	0.81[ASN][1000 genomes]
rs1284999	0.93[CHB][hapmap];0.88[JPT][hapmap]
rs1285004	1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1285005	0.87[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs1285006	0.81[ASN][1000 genomes]
rs1285007	0.87[CHB][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs1285008	0.81[ASN][1000 genomes]
rs1285009	0.87[CHB][hapmap];0.90[CHD][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs1285010	0.81[ASN][1000 genomes]
rs1285011	0.87[CHB][hapmap];0.90[CHD][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs1285013	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1285014	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1285020	0.80[ASN][1000 genomes]
rs1285021	0.81[ASN][1000 genomes]
rs1285022	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1285023	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1285026	0.89[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1285027	0.82[ASN][1000 genomes]
rs1285028	0.81[ASN][1000 genomes]
rs1285029	0.87[CHB][hapmap];0.90[CHD][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs1285030	0.84[CHB][hapmap];0.81[ASN][1000 genomes]
rs1285031	0.80[ASN][1000 genomes]
rs1285033	0.87[CHB][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs1290386	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1300126	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1304168	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13201942	0.81[CHB][hapmap];0.81[CHD][hapmap];0.88[JPT][hapmap]
rs13202529	0.81[AMR][1000 genomes]
rs13205113	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs13207575	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13209827	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs1321081	0.85[CHD][hapmap]
rs13211006	0.87[CHB][hapmap];0.88[JPT][hapmap]
rs1324530	0.87[CHB][hapmap];0.90[CHD][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs1324531	0.95[ASN][1000 genomes]
rs1324532	1.00[ASW][hapmap];0.91[CEU][hapmap];0.86[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];0.84[MEX][hapmap];0.91[TSI][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1324535	0.87[CHB][hapmap];0.90[CHD][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs1324537	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1324540	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1329710	0.88[CHB][hapmap];0.88[CHD][hapmap];0.94[JPT][hapmap]
rs1329713	0.83[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs1329714	0.87[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes]
rs1359336	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1406848	0.87[CHB][hapmap];0.88[JPT][hapmap]
rs1411148	0.81[ASW][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.80[MEX][hapmap];1.00[MKK][hapmap];0.84[TSI][hapmap];0.83[YRI][hapmap];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1581777	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1629542	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16873257	0.87[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs16873345	0.87[CHB][hapmap];0.90[CHD][hapmap];0.88[JPT][hapmap]
rs16873348	0.87[CHB][hapmap];0.88[JPT][hapmap]
rs16873364	0.87[CHB][hapmap];0.88[JPT][hapmap]
rs16873366	0.87[CHB][hapmap];0.90[CHD][hapmap];0.88[JPT][hapmap]
rs16873373	0.87[CHB][hapmap];0.88[JPT][hapmap]
rs16873379	0.87[CHB][hapmap];0.88[JPT][hapmap]
rs17288278	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs17424547	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs1748231	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1748233	0.87[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs1748234	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.84[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];0.94[YRI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1748235	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1748236	0.81[ASN][1000 genomes]
rs1748237	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1748238	0.87[CHB][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs1748240	0.81[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs1748242	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1797145	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1797147	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1797156	0.81[ASN][1000 genomes]
rs1852986	1.00[ASW][hapmap];0.81[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.80[MEX][hapmap];0.98[MKK][hapmap];0.84[TSI][hapmap];0.84[YRI][hapmap];0.83[ASN][1000 genomes]
rs1853652	0.81[ASN][1000 genomes]
rs1886345	0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1937046	1.00[ASW][hapmap];0.92[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];0.84[MEX][hapmap];0.86[MKK][hapmap];0.91[TSI][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1937047	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1971482	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs2024786	0.87[CHB][hapmap];0.88[JPT][hapmap]
rs2024787	0.87[CHB][hapmap];0.88[JPT][hapmap]
rs2038766	0.81[ASN][1000 genomes]
rs2057552	0.87[CHB][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs2057553	0.87[CHB][hapmap];0.90[CHD][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs2093901	0.98[ASN][1000 genomes]
rs2093903	0.98[ASN][1000 genomes]
rs2186062	0.89[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2396380	0.89[ASN][1000 genomes]
rs2396381	0.81[ASN][1000 genomes]
rs2396425	0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2396426	0.84[ASN][1000 genomes]
rs2396504	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2763134	0.82[ASN][1000 genomes]
rs2815263	0.87[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs34167737	0.83[ASN][1000 genomes]
rs35817842	0.82[ASN][1000 genomes]
rs3763190	0.87[CHB][hapmap];0.90[CHD][hapmap];0.88[JPT][hapmap]
rs3920903	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs3923353	0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs4072928	0.89[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.98[TSI][hapmap];0.83[YRI][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4312985	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs4352679	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4373351	0.93[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs4398713	0.81[CEU][hapmap];0.88[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.82[TSI][hapmap]
rs4412189	0.89[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4446571	0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4510673	0.85[CHD][hapmap]
rs4521586	0.81[ASN][1000 genomes]
rs4521587	0.87[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs4590263	0.87[CHB][hapmap];0.88[JPT][hapmap]
rs4610549	0.80[ASN][1000 genomes]
rs4711809	0.80[CHB][hapmap]
rs4711814	0.82[JPT][hapmap]
rs4714834	0.81[CHB][hapmap];0.81[CHD][hapmap];0.88[JPT][hapmap]
rs4714836	0.92[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.91[TSI][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4714842	0.86[ASN][1000 genomes]
rs4714845	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4714846	0.83[ASN][1000 genomes]
rs4714847	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4714848	0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4714850	0.87[CHB][hapmap];0.94[JPT][hapmap]
rs4714853	0.87[CHB][hapmap];0.90[CHD][hapmap];0.88[JPT][hapmap]
rs56138724	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56175185	0.82[ASN][1000 genomes]
rs6458418	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6458419	0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6458420	0.93[ASN][1000 genomes]
rs6458423	0.93[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6458425	0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6458427	0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6458428	0.98[ASN][1000 genomes]
rs6458430	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6458432	0.84[CHB][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs6458433	0.82[ASN][1000 genomes]
rs6458434	0.83[ASN][1000 genomes]
rs6458435	0.87[CHB][hapmap];0.90[CHD][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs6458440	0.87[CHB][hapmap];0.88[JPT][hapmap]
rs6458441	0.83[ASN][1000 genomes]
rs6899378	0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6899763	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs6899845	0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6901161	0.82[ASN][1000 genomes]
rs6901786	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.84[MEX][hapmap];0.98[MKK][hapmap];0.98[TSI][hapmap];0.94[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6905396	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6910974	0.81[YRI][hapmap];0.83[AMR][1000 genomes]
rs6917352	0.87[CHB][hapmap];0.90[CHD][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs6917594	0.81[ASN][1000 genomes]
rs6919847	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs6922660	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs6922772	0.88[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs6923436	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6925467	0.87[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs6926638	0.87[CHB][hapmap];0.88[JPT][hapmap]
rs6928753	0.81[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.82[ASN][1000 genomes]
rs6932804	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6932926	0.87[CHB][hapmap];0.88[JPT][hapmap]
rs6933449	0.82[ASN][1000 genomes]
rs6933553	0.83[ASN][1000 genomes]
rs6934594	0.93[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs6935398	0.84[ASN][1000 genomes]
rs6936475	0.87[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs6937317	0.95[ASN][1000 genomes]
rs6938177	0.81[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6938316	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6941169	0.98[ASN][1000 genomes]
rs73449282	0.81[ASN][1000 genomes]
rs73735337	0.82[ASN][1000 genomes]
rs73735338	0.81[ASN][1000 genomes]
rs7451423	0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7738526	0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7739928	0.93[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7740083	0.84[ASN][1000 genomes]
rs7740542	0.87[CHB][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs7742360	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs7743116	0.93[ASN][1000 genomes]
rs7745506	0.87[CHB][hapmap];0.88[JPT][hapmap]
rs7750380	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7757282	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7758031	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7760112	0.87[CHB][hapmap];0.90[CHD][hapmap];0.88[JPT][hapmap]
rs7763450	0.89[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7763973	0.82[ASN][1000 genomes]
rs7764102	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7767025	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7769231	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7775717	0.88[CHB][hapmap];0.94[JPT][hapmap]
rs927658	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296452	0.83[ASN][1000 genomes]
rs9296453	0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9296455	0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9296457	0.81[ASN][1000 genomes]
rs9296458	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9349309	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9349313	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9349315	1.00[ASN][1000 genomes]
rs9357469	0.88[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs9357470	0.88[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs9357478	0.97[ASN][1000 genomes]
rs9357480	0.88[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9357484	0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs9367214	0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9369529	0.89[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes]
rs9369530	0.83[ASN][1000 genomes]
rs9369533	0.89[ASN][1000 genomes]
rs9369534	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9369549	0.87[CHB][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs9369551	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9369558	0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs9381361	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9381364	0.93[ASN][1000 genomes]
rs9381365	1.00[ASW][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.80[MEX][hapmap];1.00[MKK][hapmap];0.84[TSI][hapmap];0.89[YRI][hapmap];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9381366	0.93[ASN][1000 genomes]
rs9381373	0.81[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.87[TSI][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9381383	0.84[ASN][1000 genomes]
rs9395063	0.81[CEU][hapmap];0.89[ASN][1000 genomes]
rs9395065	0.88[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9395066	0.94[CHB][hapmap];0.94[CHD][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs9395079	0.95[ASN][1000 genomes]
rs9395081	0.87[CHB][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs9395086	0.95[ASN][1000 genomes]
rs9395088	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9395095	0.94[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs9463076	0.81[ASW][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.80[MEX][hapmap];1.00[MKK][hapmap];0.87[TSI][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9463081	0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9463083	0.84[ASN][1000 genomes]
rs9472442	0.87[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs9472451	1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.84[MKK][hapmap];0.98[TSI][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9472453	0.94[CHB][hapmap];0.94[CHD][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs964452	0.87[CHB][hapmap];0.83[JPT][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs967588	0.87[CHB][hapmap];0.87[JPT][hapmap]
rs969211	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs988147	1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.84[MKK][hapmap];0.98[TSI][hapmap];0.83[YRI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1024370	chr6:44878053-45251451	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv885864	chr6:44890760-45198796	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	nsv492309	chr6:45020402-45233484	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1032906	chr6:45069368-45212863	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1285019	SUPT3H	Cis_1M	lymphoblastoid	RTeQTL
rs1285019	SUPT3H	cis	multi-tissue	Pritchard

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45162000-45171800	Enhancers	Dnd41	blood
2	chr6:45166400-45167800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr6:45167000-45167800	Enhancers	Fetal Intestine Small	intestine
4	chr6:45167000-45168200	Enhancers	Fetal Intestine Large	intestine
5	chr6:45167000-45168800	Enhancers	Liver	Liver
6	chr6:45167200-45167800	Enhancers	Primary T cells from cord blood	blood
7	chr6:45167200-45167800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr6:45167200-45168400	Flanking Active TSS	HepG2	liver
9	chr6:45167200-45168600	Enhancers	Pancreatic Islets	Pancreatic Islet
10	chr6:45167400-45167800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:45167400-45167800	Enhancers	Fetal Lung	lung

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Variant report

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