Variant report

Variant	rs9463076
Chromosome Location	chr6:45171362-45171363
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:45170143..45173003-chr6:45173758..45175670,2	MCF-7	breast:
2	chr6:45169238..45172047-chr6:45343941..45345557,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000196284	Chromatin interaction

Extended variants
information (count: 266 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:259)

rs_ID	r²[population]
rs1023090	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1023091	0.89[JPT][hapmap]
rs1028944	0.89[JPT][hapmap]
rs1041332	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.92[MEX][hapmap];0.84[MKK][hapmap];0.98[TSI][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10456552	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1080415	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10807318	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10807319	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10807320	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10948198	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10948222	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10948229	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1159131	0.83[CHD][hapmap];0.94[JPT][hapmap]
rs11964325	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.96[MEX][hapmap];0.83[TSI][hapmap]
rs11966936	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11968042	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12190261	0.81[ASN][1000 genomes]
rs12194311	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12199720	0.82[ASN][1000 genomes]
rs12204678	0.90[ASN][1000 genomes]
rs12205071	0.83[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.83[TSI][hapmap];0.82[ASN][1000 genomes]
rs12205274	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12208023	0.83[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.96[MEX][hapmap];0.84[MKK][hapmap];0.83[TSI][hapmap];0.82[ASN][1000 genomes]
rs12208483	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12208924	0.82[ASW][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.96[MEX][hapmap];0.95[MKK][hapmap];0.89[TSI][hapmap];0.89[YRI][hapmap];0.81[ASN][1000 genomes]
rs12209727	0.91[ASW][hapmap];0.88[CEU][hapmap];0.89[CHD][hapmap];0.86[GIH][hapmap];0.87[LWK][hapmap];0.84[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes]
rs12524270	0.89[CHD][hapmap];0.89[JPT][hapmap]
rs12524323	0.82[ASN][1000 genomes]
rs12526649	0.89[JPT][hapmap]
rs12527743	0.81[ASN][1000 genomes]
rs12528232	0.80[CHD][hapmap];0.89[JPT][hapmap]
rs12528762	0.89[JPT][hapmap]
rs12529295	0.89[JPT][hapmap]
rs12529490	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs12529946	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];0.96[MEX][hapmap];0.84[MKK][hapmap];0.89[TSI][hapmap];0.84[YRI][hapmap];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12529990	0.89[JPT][hapmap]
rs12530207	0.89[CHD][hapmap];0.89[JPT][hapmap]
rs12662272	0.88[JPT][hapmap]
rs12662685	0.83[CHD][hapmap];0.89[JPT][hapmap]
rs12663469	0.89[JPT][hapmap]
rs1284955	0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs1284961	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1284962	0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs1284964	0.89[CHD][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs1284965	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1284967	0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs1284969	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.93[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1284972	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1284973	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1284975	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1284982	1.00[ASW][hapmap];0.87[LWK][hapmap];0.96[MEX][hapmap];0.83[TSI][hapmap];0.81[AMR][1000 genomes]
rs1284983	0.81[AMR][1000 genomes]
rs1284986	0.89[JPT][hapmap]
rs1284987	0.83[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];0.83[TSI][hapmap]
rs1284988	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1284992	0.83[ASW][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.86[MKK][hapmap];0.83[TSI][hapmap];0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1284999	0.88[CHB][hapmap];0.89[JPT][hapmap]
rs1285004	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.87[TSI][hapmap];0.89[ASN][1000 genomes]
rs1285005	0.89[JPT][hapmap]
rs1285007	0.89[JPT][hapmap]
rs1285009	0.89[CHD][hapmap];0.89[JPT][hapmap]
rs1285011	0.89[CHD][hapmap];0.89[JPT][hapmap]
rs1285013	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1285014	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1285019	0.81[ASW][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.80[MEX][hapmap];1.00[MKK][hapmap];0.87[TSI][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1285022	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1285023	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1285026	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1285029	0.89[CHD][hapmap];0.89[JPT][hapmap]
rs1285033	0.89[JPT][hapmap]
rs1290386	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1300126	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1304168	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13201942	0.80[CHD][hapmap];0.89[JPT][hapmap]
rs13205113	0.89[JPT][hapmap]
rs13207575	0.82[ASN][1000 genomes]
rs13209827	0.89[JPT][hapmap]
rs1321081	0.87[CHD][hapmap]
rs13211006	0.89[JPT][hapmap]
rs1324530	0.89[CHD][hapmap];0.89[JPT][hapmap]
rs1324531	0.93[ASN][1000 genomes]
rs1324532	0.83[ASW][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.83[TSI][hapmap];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1324535	0.89[CHD][hapmap];0.89[JPT][hapmap]
rs1324537	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1324540	0.91[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1329713	0.90[CHB][hapmap];0.92[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap]
rs1329714	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs1359336	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1406848	0.88[JPT][hapmap]
rs1411148	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];0.95[YRI][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1581777	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1629542	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs16873257	0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs16873345	0.91[CHD][hapmap];0.89[JPT][hapmap]
rs16873348	0.89[JPT][hapmap]
rs16873364	0.89[JPT][hapmap]
rs16873366	0.89[CHD][hapmap];0.89[JPT][hapmap]
rs16873373	0.89[JPT][hapmap]
rs16873379	0.89[JPT][hapmap]
rs17288278	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17288334	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17424547	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1748231	0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1748233	0.84[CHB][hapmap];0.89[JPT][hapmap]
rs1748234	0.83[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];0.87[TSI][hapmap];0.95[YRI][hapmap];0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1748235	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1748237	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1748238	0.89[JPT][hapmap]
rs1748240	0.89[JPT][hapmap]
rs1748242	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.93[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1797145	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.93[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1797147	0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1852986	0.83[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.98[TSI][hapmap];0.84[YRI][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1886345	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1937046	0.83[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.86[MKK][hapmap];0.83[TSI][hapmap];0.87[ASN][1000 genomes]
rs1937047	0.87[ASN][1000 genomes]
rs1971482	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2024786	0.89[JPT][hapmap]
rs2024787	0.89[JPT][hapmap]
rs2057552	0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs2057553	0.89[CHD][hapmap];0.89[JPT][hapmap]
rs2093901	0.97[ASN][1000 genomes]
rs2093903	0.97[ASN][1000 genomes]
rs2186062	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2396380	0.87[ASN][1000 genomes]
rs2396425	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2396426	0.82[ASN][1000 genomes]
rs2396504	0.81[ASN][1000 genomes]
rs2763134	0.81[ASN][1000 genomes]
rs2815263	0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs34167737	0.81[ASN][1000 genomes]
rs3763190	0.89[CHD][hapmap];0.89[JPT][hapmap]
rs3920903	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3923353	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4072928	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];0.89[TSI][hapmap];0.84[YRI][hapmap];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4312985	0.86[JPT][hapmap]
rs4352679	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4373351	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs4398713	0.92[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4412189	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs4446571	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4463250	0.80[AMR][1000 genomes]
rs4510673	0.89[CHD][hapmap]
rs4521587	0.89[JPT][hapmap]
rs4590263	0.89[JPT][hapmap]
rs4610549	0.81[AMR][1000 genomes]
rs4711809	0.82[CHB][hapmap]
rs4711814	0.83[JPT][hapmap]
rs4714834	0.80[CHD][hapmap];0.89[JPT][hapmap]
rs4714836	0.91[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.96[MEX][hapmap];0.83[TSI][hapmap];0.82[ASN][1000 genomes]
rs4714842	0.84[ASN][1000 genomes]
rs4714845	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4714846	0.81[ASN][1000 genomes]
rs4714847	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4714848	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4714850	0.94[JPT][hapmap]
rs4714853	0.89[CHD][hapmap];0.89[JPT][hapmap]
rs56138724	0.88[ASN][1000 genomes]
rs56175185	0.81[ASN][1000 genomes]
rs62400336	0.81[EUR][1000 genomes]
rs6458418	0.81[ASN][1000 genomes]
rs6458419	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6458420	0.92[ASN][1000 genomes]
rs6458423	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6458425	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6458427	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6458428	0.97[ASN][1000 genomes]
rs6458430	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6458432	0.81[ASN][1000 genomes]
rs6458433	0.81[ASN][1000 genomes]
rs6458434	0.81[ASN][1000 genomes]
rs6458435	0.89[CHD][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs6458440	0.89[JPT][hapmap]
rs6458441	0.82[ASN][1000 genomes]
rs6899378	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6899763	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs6899845	1.00[CHB][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs6901161	0.81[ASN][1000 genomes]
rs6901786	0.83[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.96[MEX][hapmap];0.98[MKK][hapmap];0.89[TSI][hapmap];0.95[YRI][hapmap];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6905396	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6910974	0.92[CEU][hapmap];0.94[YRI][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6917352	0.89[CHD][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs6919847	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap]
rs6922660	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs6922772	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6923436	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6925467	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs6926638	0.89[JPT][hapmap]
rs6928753	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6932804	0.81[ASN][1000 genomes]
rs6932926	0.89[JPT][hapmap]
rs6933449	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6933553	0.82[ASN][1000 genomes]
rs6934594	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6935398	0.82[ASN][1000 genomes]
rs6936475	0.89[JPT][hapmap]
rs6937317	0.93[ASN][1000 genomes]
rs6938177	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6938316	0.93[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6941169	0.96[ASN][1000 genomes]
rs7451423	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7738526	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7739928	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7740083	0.82[ASN][1000 genomes]
rs7740542	0.89[JPT][hapmap]
rs7742360	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes]
rs7743116	0.92[ASN][1000 genomes]
rs7745506	0.89[JPT][hapmap]
rs7750380	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7757282	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7758031	0.82[ASN][1000 genomes]
rs7760112	0.89[CHD][hapmap];0.89[JPT][hapmap]
rs7760342	0.84[CEU][hapmap]
rs7763450	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7767025	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7769231	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs927658	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9296452	0.81[ASN][1000 genomes]
rs9296453	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9296455	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9296458	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9349309	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9349313	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9349315	0.98[ASN][1000 genomes]
rs9357469	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs9357470	0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9357478	0.95[ASN][1000 genomes]
rs9357480	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9357484	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs9367214	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9369529	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs9369530	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9369533	0.87[ASN][1000 genomes]
rs9369534	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9369549	0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs9369558	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs9381361	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9381364	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9381365	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];0.89[YRI][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9381366	0.92[ASN][1000 genomes]
rs9381373	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9381383	0.82[ASN][1000 genomes]
rs9395063	0.92[CEU][hapmap];0.85[CHB][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9395065	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs9395066	1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs9395079	0.93[ASN][1000 genomes]
rs9395081	0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs9395086	0.93[ASN][1000 genomes]
rs9395088	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9395095	1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs9463081	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9463083	0.82[ASN][1000 genomes]
rs9472442	0.89[JPT][hapmap]
rs9472451	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.96[MEX][hapmap];0.84[MKK][hapmap];0.89[TSI][hapmap];0.89[YRI][hapmap];0.91[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9472453	0.84[CHB][hapmap];0.92[CHD][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs964452	0.84[CHB][hapmap];0.84[JPT][hapmap];0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs967588	0.88[JPT][hapmap]
rs969211	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs988147	0.91[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.96[MEX][hapmap];0.84[MKK][hapmap];0.89[TSI][hapmap];0.95[YRI][hapmap];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1024370	chr6:44878053-45251451	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv885864	chr6:44890760-45198796	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	nsv492309	chr6:45020402-45233484	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1032906	chr6:45069368-45212863	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1028068	chr6:45169010-45246577	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs9463076	SUPT3H	cis	multi-tissue	Pritchard
rs9463076	SUPT3H	cis	cerebellum	SCAN
rs9463076	CD2AP	cis	parietal	SCAN
rs9463076	C6orf226	cis	cerebellum	SCAN
rs9463076	SUPT3H	cis	parietal	SCAN
rs9463076	SUPT3H	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45162000-45171800	Enhancers	Dnd41	blood
2	chr6:45169200-45174400	Weak transcription	HepG2	liver
3	chr6:45171000-45171400	Enhancers	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links