Variant report

Variant	rs6458419
Chromosome Location	chr6:45085038-45085039
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:45083331..45086142-chr6:45155794..45158780,2	K562	blood:

Extended variants
information (count: 290 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:279)

rs_ID	r²[population]
rs1023089	0.82[ASN][1000 genomes]
rs1023090	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1023091	0.89[JPT][hapmap]
rs1028944	0.89[JPT][hapmap]
rs1041332	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1080415	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10807318	0.89[ASN][1000 genomes]
rs10807319	0.86[ASN][1000 genomes]
rs10807320	0.85[ASN][1000 genomes]
rs10948185	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs10948186	0.82[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10948187	0.85[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs10948188	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs10948190	0.85[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.81[EUR][1000 genomes]
rs10948192	0.84[JPT][hapmap]
rs10948194	0.85[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.80[EUR][1000 genomes]
rs10948197	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs10948198	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10948222	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.82[ASN][1000 genomes]
rs1159131	0.94[JPT][hapmap]
rs11964325	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11966936	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11967188	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs11968042	0.89[ASN][1000 genomes]
rs12190261	0.83[ASN][1000 genomes]
rs12190513	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs12196818	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs12204678	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12205071	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12205274	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12208023	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12208483	0.89[ASN][1000 genomes]
rs12214778	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs12524270	0.89[JPT][hapmap]
rs12526649	0.80[CHB][hapmap];0.90[JPT][hapmap]
rs12528232	0.89[JPT][hapmap]
rs12528762	0.90[JPT][hapmap]
rs12529490	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs12529946	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12529990	0.80[CHB][hapmap];0.90[JPT][hapmap]
rs12530207	0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs12662272	0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs12662685	0.89[JPT][hapmap]
rs1284955	0.80[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs1284961	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1284962	0.80[CHB][hapmap];0.89[JPT][hapmap];0.80[ASN][1000 genomes]
rs1284964	0.89[JPT][hapmap];0.80[ASN][1000 genomes]
rs1284965	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1284967	0.80[CHB][hapmap];0.89[JPT][hapmap];0.80[ASN][1000 genomes]
rs1284969	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1284972	0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1284973	0.98[ASN][1000 genomes]
rs1284975	0.98[ASN][1000 genomes]
rs1284979	0.86[ASN][1000 genomes]
rs1284980	0.89[ASN][1000 genomes]
rs1284986	0.80[CHB][hapmap];0.89[JPT][hapmap]
rs1284987	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1284988	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1284989	0.83[ASN][1000 genomes]
rs1284992	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1284993	0.85[ASN][1000 genomes]
rs1284995	0.86[ASN][1000 genomes]
rs1284999	0.89[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs1285003	0.86[ASN][1000 genomes]
rs1285004	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1285005	0.80[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs1285006	0.85[ASN][1000 genomes]
rs1285007	0.80[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs1285008	0.85[ASN][1000 genomes]
rs1285009	0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs1285010	0.85[ASN][1000 genomes]
rs1285011	0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs1285013	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1285014	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1285019	0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1285020	0.84[ASN][1000 genomes]
rs1285021	0.85[ASN][1000 genomes]
rs1285022	0.98[ASN][1000 genomes]
rs1285023	0.98[ASN][1000 genomes]
rs1285025	0.83[ASN][1000 genomes]
rs1285026	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1285027	0.86[ASN][1000 genomes]
rs1285028	0.85[ASN][1000 genomes]
rs1285029	0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs1285030	0.81[CHB][hapmap];0.85[ASN][1000 genomes]
rs1285031	0.84[ASN][1000 genomes]
rs1285033	0.80[CHB][hapmap];0.89[JPT][hapmap]
rs1290386	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1300126	1.00[ASN][1000 genomes]
rs1304168	0.88[ASN][1000 genomes]
rs13201942	0.89[JPT][hapmap]
rs13205113	0.90[JPT][hapmap]
rs13207575	0.84[ASN][1000 genomes]
rs13209827	0.90[JPT][hapmap]
rs13211006	0.80[CHB][hapmap];0.89[JPT][hapmap]
rs13215618	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs13216116	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1324530	0.89[JPT][hapmap]
rs1324531	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1324532	0.94[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1324535	0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs1324537	0.97[ASN][1000 genomes]
rs1324540	0.86[ASN][1000 genomes]
rs1329710	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs1329713	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1329714	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1329715	0.89[JPT][hapmap]
rs1329716	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs1359336	0.98[ASN][1000 genomes]
rs1360195	0.89[JPT][hapmap]
rs1360197	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs1411148	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1521355	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1555681	0.92[CEU][hapmap];0.93[EUR][1000 genomes]
rs1576382	0.80[EUR][1000 genomes]
rs1581777	0.86[ASN][1000 genomes]
rs1629542	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs16873257	0.80[CHB][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs17422760	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs17424547	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1748231	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1748233	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs1748234	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1748235	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1748237	0.81[ASN][1000 genomes]
rs1748238	0.80[CHB][hapmap];0.89[JPT][hapmap]
rs1748240	0.89[JPT][hapmap]
rs1748242	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1797145	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1797147	0.85[ASN][1000 genomes]
rs1797148	0.85[ASN][1000 genomes]
rs1797149	0.85[ASN][1000 genomes]
rs1797156	0.85[ASN][1000 genomes]
rs1886345	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1937046	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1937047	0.89[ASN][1000 genomes]
rs1971482	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1980265	0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs2038766	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2057552	0.80[CHB][hapmap];0.89[JPT][hapmap]
rs2057553	0.89[JPT][hapmap]
rs2093901	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2093903	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2186062	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2396369	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2396370	0.80[EUR][1000 genomes]
rs2396371	0.86[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs2396372	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs2396380	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2396381	0.85[ASN][1000 genomes]
rs2396425	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2815263	0.80[CHB][hapmap];0.89[JPT][hapmap];0.80[ASN][1000 genomes]
rs35687006	0.89[JPT][hapmap]
rs35817842	0.82[ASN][1000 genomes]
rs3778507	0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs3799984	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs3799986	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs3799987	0.89[JPT][hapmap]
rs3920903	0.90[ASN][1000 genomes]
rs3923353	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs4312985	0.87[JPT][hapmap]
rs4352679	0.85[ASN][1000 genomes]
rs4373351	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs4398713	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs4412189	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs4446571	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.80[ASN][1000 genomes]
rs4512220	0.90[JPT][hapmap]
rs4521587	0.80[CHB][hapmap];0.90[JPT][hapmap]
rs4711807	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs4711809	0.82[CHB][hapmap]
rs4714830	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs4714834	0.89[JPT][hapmap]
rs4714836	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4714842	0.80[ASN][1000 genomes]
rs4714845	0.85[ASN][1000 genomes]
rs4714847	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4714848	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4714850	0.94[JPT][hapmap]
rs494982	0.85[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs56138724	0.90[ASN][1000 genomes]
rs608941	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs636845	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs6458418	0.80[ASN][1000 genomes]
rs6458420	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6458423	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs6458425	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6458427	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6458428	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6458430	0.89[ASN][1000 genomes]
rs6458435	0.89[JPT][hapmap]
rs6899378	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6899763	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6899845	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6901786	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6905396	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6917352	0.89[JPT][hapmap]
rs6917594	0.85[ASN][1000 genomes]
rs6919161	0.89[JPT][hapmap]
rs6919847	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6922660	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6922772	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6923436	0.89[ASN][1000 genomes]
rs6925017	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs6925467	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs6933553	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6936475	0.80[CHB][hapmap];0.89[JPT][hapmap]
rs6937317	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6938177	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6938316	0.89[ASN][1000 genomes]
rs6938592	0.82[ASN][1000 genomes]
rs6941169	0.89[ASN][1000 genomes]
rs73449282	0.85[ASN][1000 genomes]
rs7451423	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7738526	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7739928	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7740542	0.80[CHB][hapmap];0.90[JPT][hapmap]
rs7742360	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7743116	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7745506	0.89[JPT][hapmap]
rs7749865	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7750380	0.98[ASN][1000 genomes]
rs7758031	0.84[ASN][1000 genomes]
rs7763450	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7763973	0.82[ASN][1000 genomes]
rs7767025	0.80[ASN][1000 genomes]
rs7775717	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs927658	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9296450	0.84[JPT][hapmap]
rs9296453	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.86[ASN][1000 genomes]
rs9296455	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9349309	0.85[ASN][1000 genomes]
rs9349313	0.98[ASN][1000 genomes]
rs9349315	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9357464	0.86[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs9357469	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9357470	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9357471	0.86[CEU][hapmap];0.91[EUR][1000 genomes]
rs9357478	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9357480	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.86[ASN][1000 genomes]
rs9357484	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs9367211	0.85[CEU][hapmap];0.84[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap]
rs9367214	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9369529	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs9369530	0.84[ASN][1000 genomes]
rs9369533	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9369534	0.98[ASN][1000 genomes]
rs9369549	0.80[CHB][hapmap];0.89[JPT][hapmap]
rs9369558	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs9381361	0.82[ASN][1000 genomes]
rs9381364	0.98[ASN][1000 genomes]
rs9381365	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs9381366	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9381373	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9395063	0.82[CHB][hapmap];0.90[ASN][1000 genomes]
rs9395065	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9395066	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9395069	0.85[EUR][1000 genomes]
rs9395079	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9395081	0.80[CHB][hapmap];0.89[JPT][hapmap]
rs9395084	0.89[CEU][hapmap]
rs9395086	0.86[ASN][1000 genomes]
rs9395088	0.85[ASN][1000 genomes]
rs9395095	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[YRI][hapmap]
rs9463055	0.80[EUR][1000 genomes]
rs9463069	0.84[ASN][1000 genomes]
rs9463076	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9463078	0.88[CEU][hapmap]
rs9463081	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.86[ASN][1000 genomes]
rs9472407	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs9472409	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs9472414	0.90[JPT][hapmap]
rs9472416	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs9472442	0.80[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs9472451	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs9472453	0.84[CHB][hapmap];0.89[JPT][hapmap]
rs964452	0.85[CHB][hapmap];0.84[JPT][hapmap];0.90[ASN][1000 genomes]
rs969211	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs976699	0.92[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.81[EUR][1000 genomes]
rs988147	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1024370	chr6:44878053-45251451	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv885864	chr6:44890760-45198796	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1023018	chr6:44925393-45152912	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv538212	chr6:44925393-45152912	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1026728	chr6:45001948-45126730	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv538213	chr6:45001948-45126730	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv885865	chr6:45012223-45102025	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv492309	chr6:45020402-45233484	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
11	nsv1032906	chr6:45069368-45212863	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6458419	SUPT3H	Cis_1M	lymphoblastoid	RTeQTL
rs6458419	SUPT3H	cis	multi-tissue	Pritchard

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45082400-45085600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr6:45082800-45085200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:45082800-45085800	Enhancers	Dnd41	blood
4	chr6:45083200-45085400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:45083200-45086200	Enhancers	Fetal Heart	heart
6	chr6:45083400-45085200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:45083400-45085200	Enhancers	HMEC	breast
8	chr6:45083400-45085400	Enhancers	NHDF-Ad	bronchial
9	chr6:45083400-45086800	Enhancers	HSMM	muscle
10	chr6:45083800-45085200	Enhancers	Osteobl	bone
11	chr6:45084000-45085200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:45084000-45085200	Enhancers	Primary T cells from cord blood	blood
13	chr6:45084600-45086200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:45084800-45085200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr6:45084800-45085600	Enhancers	Muscle Satellite Cultured Cells	--
16	chr6:45085000-45085400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links