Variant report

Variant	rs10948194
Chromosome Location	chr6:44951990-44951991
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:44949240..44952197-chr6:44957383..44960219,3	K562	blood:

Extended variants
information (count: 268 )
Associated
traits (count: 8 )

rSNPs within LD-proxies of this variant (count:254)

rs_ID	r²[population]
rs1023089	0.81[ASN][1000 genomes]
rs1023090	0.85[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1023091	0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs1028944	0.89[CHD][hapmap];0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs1041332	0.90[CHB][hapmap];0.92[CHD][hapmap];0.81[GIH][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs1041333	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10456119	0.90[ASN][1000 genomes]
rs10484627	0.90[CHB][hapmap];0.97[CHD][hapmap];0.89[JPT][hapmap];0.90[ASN][1000 genomes]
rs10948183	1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs10948185	0.95[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs10948186	0.92[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10948187	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10948188	0.94[CHB][hapmap];1.00[CHD][hapmap];0.89[JPT][hapmap];0.95[MEX][hapmap];0.83[TSI][hapmap];0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10948190	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10948192	0.89[JPT][hapmap]
rs10948193	0.98[ASN][1000 genomes]
rs10948195	0.94[EUR][1000 genomes]
rs10948197	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10948198	0.90[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs1150806	0.90[ASN][1000 genomes]
rs1159131	0.84[CHB][hapmap];0.92[CHD][hapmap];0.89[JPT][hapmap];0.83[TSI][hapmap];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11964325	0.90[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap]
rs11966936	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs11967188	0.94[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12190513	1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12191518	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12196818	0.95[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.98[ASN][1000 genomes]
rs12198904	0.87[ASN][1000 genomes]
rs12205071	0.90[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap]
rs12207620	0.87[ASN][1000 genomes]
rs12208023	0.90[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap]
rs12209076	0.87[ASN][1000 genomes]
rs12214778	0.95[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];0.98[ASN][1000 genomes]
rs12524069	0.91[ASN][1000 genomes]
rs12525009	0.90[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs12525773	0.85[ASN][1000 genomes]
rs12526649	0.83[JPT][hapmap]
rs12526711	0.89[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs12526755	0.84[ASN][1000 genomes]
rs12527908	0.81[ASN][1000 genomes]
rs12528232	0.89[CHD][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs12528762	0.83[JPT][hapmap]
rs12529490	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs12529522	0.86[CHD][hapmap]
rs12529990	0.83[JPT][hapmap]
rs12530016	0.87[CHD][hapmap];0.81[ASN][1000 genomes]
rs12530207	0.81[CHD][hapmap];0.83[JPT][hapmap]
rs12661902	0.83[ASN][1000 genomes]
rs12662272	0.82[JPT][hapmap]
rs12663798	0.84[ASN][1000 genomes]
rs1284972	0.84[CHB][hapmap];0.94[JPT][hapmap]
rs1284986	0.83[JPT][hapmap]
rs1284987	0.90[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap]
rs1284988	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs1284992	0.90[CHB][hapmap];0.89[CHD][hapmap];0.94[JPT][hapmap]
rs1284999	0.83[JPT][hapmap]
rs1285004	0.90[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap]
rs1285005	0.83[JPT][hapmap]
rs1285007	0.83[JPT][hapmap]
rs1285009	0.81[CHD][hapmap];0.83[JPT][hapmap]
rs1285011	0.81[CHD][hapmap];0.83[JPT][hapmap]
rs1285026	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs1285029	0.81[CHD][hapmap];0.83[JPT][hapmap]
rs1285033	0.83[JPT][hapmap]
rs1293457	0.81[AFR][1000 genomes]
rs1293467	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs1293598	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1293600	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13196587	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs13201942	0.89[CHD][hapmap];0.83[JPT][hapmap]
rs13202529	0.88[ASN][1000 genomes]
rs13203495	0.98[ASN][1000 genomes]
rs13205113	0.83[JPT][hapmap]
rs13206526	0.89[CHD][hapmap]
rs13209827	0.83[JPT][hapmap]
rs13211006	0.82[JPT][hapmap]
rs13211229	0.97[ASN][1000 genomes]
rs13213412	0.88[ASN][1000 genomes]
rs13215618	1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs13216116	0.95[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];0.95[MEX][hapmap];0.81[TSI][hapmap];0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1324530	0.81[CHD][hapmap];0.83[JPT][hapmap]
rs1324532	0.84[CHB][hapmap];0.89[CHD][hapmap];0.94[JPT][hapmap]
rs1324535	0.81[CHD][hapmap];0.83[JPT][hapmap]
rs1329710	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1329713	0.94[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];0.82[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1329714	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1329715	0.89[CHD][hapmap];0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs1329716	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1360195	0.89[CHD][hapmap];0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs1360196	0.93[EUR][1000 genomes]
rs1360197	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1402599	0.87[CHD][hapmap]
rs1411148	0.90[CHB][hapmap];0.92[CHD][hapmap];0.81[GIH][hapmap];0.94[JPT][hapmap]
rs1521355	0.95[CHB][hapmap];0.94[JPT][hapmap];0.98[ASN][1000 genomes]
rs1576382	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1578676	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1590864	0.92[ASN][1000 genomes]
rs17339124	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs17422760	0.90[CHB][hapmap];0.97[CHD][hapmap];0.89[JPT][hapmap];0.95[MEX][hapmap];0.89[ASN][1000 genomes]
rs17424547	0.95[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs1748231	0.84[CHB][hapmap];0.94[JPT][hapmap]
rs1748233	0.83[JPT][hapmap]
rs1748234	0.90[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap]
rs1748235	0.87[CHB][hapmap];0.94[JPT][hapmap]
rs1748238	0.83[JPT][hapmap]
rs1831310	0.94[ASN][1000 genomes]
rs1854547	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1886345	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs1891411	0.81[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs1935551	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1937046	0.90[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap]
rs1971482	0.95[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs1980265	1.00[ASW][hapmap];0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.83[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2186062	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs2396369	0.95[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];0.94[JPT][hapmap];0.98[ASN][1000 genomes]
rs2396370	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2396371	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2396372	0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2396373	0.85[CEU][hapmap];0.87[EUR][1000 genomes]
rs2396375	0.87[ASN][1000 genomes]
rs34286542	0.85[ASN][1000 genomes]
rs34808716	0.88[ASN][1000 genomes]
rs34982599	0.81[ASN][1000 genomes]
rs35103634	0.84[ASN][1000 genomes]
rs35357222	0.97[ASN][1000 genomes]
rs35687006	0.89[CHD][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs35704584	0.84[ASN][1000 genomes]
rs35813980	0.98[ASN][1000 genomes]
rs35908738	0.84[ASN][1000 genomes]
rs36105034	0.85[ASN][1000 genomes]
rs3778507	1.00[ASW][hapmap];0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3799965	0.86[CHD][hapmap]
rs3799967	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3799968	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.81[CHD][hapmap];0.98[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3799971	1.00[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3799973	0.89[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs3799976	0.95[CHB][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs3799977	0.95[CHB][hapmap];1.00[CHD][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs3799978	0.83[EUR][1000 genomes]
rs3799979	0.95[CHB][hapmap];1.00[CHD][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs3799981	0.95[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs3799984	0.95[CHB][hapmap];0.89[JPT][hapmap];0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3799986	0.95[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs3799987	0.89[CHD][hapmap];0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs3823252	0.89[CHD][hapmap]
rs3846896	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3957281	0.88[ASN][1000 genomes]
rs4398713	0.95[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs4412189	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs4475320	0.84[ASN][1000 genomes]
rs4512220	0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs4711803	0.90[ASN][1000 genomes]
rs4711805	0.88[ASN][1000 genomes]
rs4711807	0.95[CHB][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs4711809	0.84[CHB][hapmap];0.81[CHD][hapmap];0.83[ASN][1000 genomes]
rs4714828	0.95[CHB][hapmap];1.00[CHD][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs4714829	0.84[ASN][1000 genomes]
rs4714830	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4714832	0.96[ASN][1000 genomes]
rs4714834	0.89[CHD][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs4714836	0.90[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap]
rs472672	0.84[ASN][1000 genomes]
rs472673	0.82[ASN][1000 genomes]
rs494982	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs500773	0.90[ASN][1000 genomes]
rs524492	0.87[CHD][hapmap]
rs538801	0.95[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs542444	0.86[CHD][hapmap]
rs55893720	0.98[ASN][1000 genomes]
rs567054	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57020561	0.88[EUR][1000 genomes]
rs588848	0.89[ASN][1000 genomes]
rs59945128	0.84[ASN][1000 genomes]
rs608941	0.95[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];0.89[JPT][hapmap];0.90[ASN][1000 genomes]
rs62438007	0.87[ASN][1000 genomes]
rs636845	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6458414	0.85[ASN][1000 genomes]
rs6458415	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6458419	0.85[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.80[EUR][1000 genomes]
rs6458423	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs67001335	0.88[ASN][1000 genomes]
rs679713	0.93[ASN][1000 genomes]
rs6899378	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs6899845	0.94[ASW][hapmap];0.85[CEU][hapmap];0.90[CHB][hapmap];0.92[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.97[LWK][hapmap];0.82[MEX][hapmap];0.98[MKK][hapmap];0.93[TSI][hapmap];0.95[YRI][hapmap]
rs6903576	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6904015	1.00[CEU][hapmap];0.94[CHB][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6904584	0.81[ASN][1000 genomes]
rs6910294	1.00[CEU][hapmap];0.90[CHB][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6910749	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs6919161	0.83[JPT][hapmap]
rs6919485	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6922660	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs6922772	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs6923519	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6925017	0.94[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs6925467	0.95[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs6933553	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6940547	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs718112	0.89[ASN][1000 genomes]
rs7739928	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs7742360	0.95[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs7745506	0.82[JPT][hapmap]
rs7747642	0.87[ASN][1000 genomes]
rs7749865	0.94[CHB][hapmap];0.94[JPT][hapmap];0.98[ASN][1000 genomes]
rs7754378	1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[JPT][hapmap];0.95[MEX][hapmap];0.89[ASN][1000 genomes]
rs7754698	0.94[CHB][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7763421	0.87[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7763450	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs7775717	0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs865940	0.84[ASN][1000 genomes]
rs929614	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs9296448	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9296450	0.89[CHD][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs9349303	0.93[CEU][hapmap];0.93[TSI][hapmap];0.85[EUR][1000 genomes]
rs9349309	0.81[ASN][1000 genomes]
rs9357459	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9357464	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9357469	0.89[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap]
rs9357470	0.95[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap]
rs9367208	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9367211	1.00[ASW][hapmap];1.00[CEU][hapmap];0.84[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.97[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9367214	0.90[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs9369512	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9369513	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9369514	1.00[ASW][hapmap];0.89[CEU][hapmap];0.95[CHB][hapmap];0.82[CHD][hapmap];0.98[GIH][hapmap];0.94[LWK][hapmap];0.95[MEX][hapmap];0.89[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9369515	0.85[EUR][1000 genomes]
rs9369516	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9369519	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs9369523	0.85[CEU][hapmap];0.91[EUR][1000 genomes]
rs9369529	0.95[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs9381359	0.85[CEU][hapmap];0.89[TSI][hapmap];0.83[EUR][1000 genomes]
rs9381361	0.81[ASN][1000 genomes]
rs9381365	0.90[CHB][hapmap];0.92[CHD][hapmap];0.81[GIH][hapmap];0.94[JPT][hapmap]
rs9395049	0.96[CEU][hapmap];0.90[CHB][hapmap]
rs9395051	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.83[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9395055	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9395058	0.91[ASN][1000 genomes]
rs9395065	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs9395066	0.94[ASW][hapmap];0.90[CHB][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];0.89[JPT][hapmap];1.00[LWK][hapmap];0.82[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];0.96[YRI][hapmap]
rs9463054	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9463055	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9472376	0.87[CHD][hapmap]
rs9472383	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9472403	0.89[EUR][1000 genomes]
rs9472407	1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9472409	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];0.95[MEX][hapmap];0.83[TSI][hapmap];0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs9472411	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs9472414	0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs9472416	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9472418	0.93[CEU][hapmap];0.90[EUR][1000 genomes]
rs9472442	0.83[JPT][hapmap]
rs969211	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs976699	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9885796	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885861	chr6:44837356-45043618	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	nsv1024370	chr6:44878053-45251451	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	esv2758051	chr6:44879791-45056758	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv2759423	chr6:44879791-45056758	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv885862	chr6:44890760-45083966	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv885863	chr6:44890760-45083966	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv885864	chr6:44890760-45198796	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
10	nsv462938	chr6:44909515-45008779	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv470817	chr6:44909515-45008779	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv603007	chr6:44909515-45008779	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv1023018	chr6:44925393-45152912	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	nsv538212	chr6:44925393-45152912	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:8)

SNP	Gene	Cis/trans	Tissue	Source
rs10948194	CYP39A1	cis	parietal	SCAN
rs10948194	SUPT3H	cis	lymphoblastoid	seeQTL
rs10948194	C6orf226	cis	cerebellum	SCAN
rs10948194	SUPT3H	cis	cerebellum	SCAN
rs10948194	MAD2L1BP	cis	cerebellum	SCAN
rs10948194	SUPT3H	cis	multi-tissue	Pritchard
rs10948194	SUPT3H	cis	parietal	SCAN
rs10948194	SUPT3H	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44940800-44957000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:44946600-44955000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr6:44946600-44955000	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr6:44947800-44962000	Weak transcription	Pancreas	Pancrea
5	chr6:44950800-44952000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr6:44950800-44952200	Enhancers	HepG2	liver
7	chr6:44951200-44980800	Weak transcription	Aorta	Aorta
8	chr6:44951800-44952000	Enhancers	Gastric	stomach

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