Variant report

Variant	rs6904584
Chromosome Location	chr6:44873802-44873803
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 192 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:189)

rs_ID	r²[population]
rs1023091	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1028944	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1041333	0.81[ASN][1000 genomes]
rs10456119	0.87[ASN][1000 genomes]
rs10484627	0.86[ASN][1000 genomes]
rs10948183	0.84[ASN][1000 genomes]
rs10948185	0.84[ASN][1000 genomes]
rs10948186	0.84[ASN][1000 genomes]
rs10948187	0.82[ASN][1000 genomes]
rs10948188	0.83[ASN][1000 genomes]
rs10948190	0.84[ASN][1000 genomes]
rs10948193	0.83[ASN][1000 genomes]
rs10948194	0.81[ASN][1000 genomes]
rs10948197	0.83[ASN][1000 genomes]
rs1150806	0.81[ASN][1000 genomes]
rs11967188	0.83[ASN][1000 genomes]
rs12190513	0.83[ASN][1000 genomes]
rs12191518	0.83[ASN][1000 genomes]
rs12196818	0.84[ASN][1000 genomes]
rs12198904	0.85[ASN][1000 genomes]
rs12207620	0.84[ASN][1000 genomes]
rs12209076	0.85[ASN][1000 genomes]
rs12214778	0.83[ASN][1000 genomes]
rs12524069	0.83[ASN][1000 genomes]
rs12525009	0.86[ASN][1000 genomes]
rs12525773	0.96[ASN][1000 genomes]
rs12526649	0.83[EUR][1000 genomes]
rs12526711	0.86[ASN][1000 genomes]
rs12526755	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12527668	0.85[EUR][1000 genomes]
rs12527908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12528232	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12528762	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12529522	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12529990	0.83[EUR][1000 genomes]
rs12530016	0.97[ASN][1000 genomes]
rs12661902	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12663530	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12663798	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1284989	0.84[EUR][1000 genomes]
rs1284993	0.84[EUR][1000 genomes]
rs1293598	0.84[ASN][1000 genomes]
rs13193495	0.84[AMR][1000 genomes]
rs13196587	0.84[ASN][1000 genomes]
rs13198471	0.84[EUR][1000 genomes]
rs13201942	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13202672	0.89[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs13203495	0.82[ASN][1000 genomes]
rs13205113	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13206526	0.87[ASN][1000 genomes]
rs13209827	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13211006	0.85[EUR][1000 genomes]
rs13211229	0.84[ASN][1000 genomes]
rs13213412	0.85[ASN][1000 genomes]
rs13216116	0.84[ASN][1000 genomes]
rs13216967	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1329710	0.82[ASN][1000 genomes]
rs1329715	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1329716	0.81[ASN][1000 genomes]
rs1360195	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1360197	0.81[ASN][1000 genomes]
rs1402599	0.89[ASN][1000 genomes]
rs1521355	0.84[ASN][1000 genomes]
rs1576382	0.81[ASN][1000 genomes]
rs1578676	0.84[ASN][1000 genomes]
rs1590864	0.84[ASN][1000 genomes]
rs16869119	0.89[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs16872574	0.89[ASN][1000 genomes]
rs17339124	0.84[ASN][1000 genomes]
rs17422760	0.86[ASN][1000 genomes]
rs1797156	0.83[EUR][1000 genomes]
rs1831310	0.80[ASN][1000 genomes]
rs1854547	0.83[ASN][1000 genomes]
rs1935549	0.90[ASN][1000 genomes]
rs1980265	0.82[ASN][1000 genomes]
rs2139863	0.91[ASN][1000 genomes]
rs2396369	0.83[ASN][1000 genomes]
rs2396370	0.83[ASN][1000 genomes]
rs2396371	0.83[ASN][1000 genomes]
rs2396372	0.83[ASN][1000 genomes]
rs2396381	0.84[EUR][1000 genomes]
rs2894599	0.89[ASN][1000 genomes]
rs34152708	0.85[EUR][1000 genomes]
rs34243039	0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs34251367	0.84[EUR][1000 genomes]
rs34286542	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34776198	0.91[ASN][1000 genomes]
rs34808716	0.86[ASN][1000 genomes]
rs34817919	0.89[ASN][1000 genomes]
rs35103634	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35134594	0.83[EUR][1000 genomes]
rs35357222	0.84[ASN][1000 genomes]
rs35687006	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35704584	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35811020	0.80[EUR][1000 genomes]
rs35813980	0.83[ASN][1000 genomes]
rs35856781	0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs35908738	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs36105034	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3778507	0.83[ASN][1000 genomes]
rs3799965	0.91[ASN][1000 genomes]
rs3799966	0.90[ASN][1000 genomes]
rs3799969	0.84[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs3799970	0.91[ASN][1000 genomes]
rs3799971	0.80[ASN][1000 genomes]
rs3799972	0.93[ASN][1000 genomes]
rs3799973	0.82[ASN][1000 genomes]
rs3799974	0.94[ASN][1000 genomes]
rs3799976	0.86[ASN][1000 genomes]
rs3799977	0.85[ASN][1000 genomes]
rs3799979	0.85[ASN][1000 genomes]
rs3799981	0.85[ASN][1000 genomes]
rs3799984	0.82[ASN][1000 genomes]
rs3799986	0.84[ASN][1000 genomes]
rs3799987	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3823252	0.91[ASN][1000 genomes]
rs3846896	0.84[ASN][1000 genomes]
rs3857589	0.87[EUR][1000 genomes]
rs3957281	0.85[ASN][1000 genomes]
rs4475320	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4512220	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4711803	0.87[ASN][1000 genomes]
rs4711805	0.87[ASN][1000 genomes]
rs4711807	0.84[ASN][1000 genomes]
rs4711809	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4714825	0.90[ASN][1000 genomes]
rs4714827	0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4714828	0.84[ASN][1000 genomes]
rs4714829	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4714830	0.83[ASN][1000 genomes]
rs4714832	0.81[ASN][1000 genomes]
rs4714834	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4714838	0.82[EUR][1000 genomes]
rs472672	0.81[ASN][1000 genomes]
rs472673	0.81[ASN][1000 genomes]
rs494982	0.83[ASN][1000 genomes]
rs500773	0.87[ASN][1000 genomes]
rs524492	0.87[ASN][1000 genomes]
rs538801	0.84[ASN][1000 genomes]
rs542444	0.91[ASN][1000 genomes]
rs55893720	0.83[ASN][1000 genomes]
rs562016	0.90[ASN][1000 genomes]
rs588848	0.84[ASN][1000 genomes]
rs59945128	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs608941	0.86[ASN][1000 genomes]
rs62438007	0.85[ASN][1000 genomes]
rs636845	0.83[ASN][1000 genomes]
rs6458414	0.86[ASN][1000 genomes]
rs6458415	0.82[ASN][1000 genomes]
rs66642874	0.89[ASN][1000 genomes]
rs67597621	0.87[ASN][1000 genomes]
rs67911131	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs679713	0.84[ASN][1000 genomes]
rs6903576	0.83[ASN][1000 genomes]
rs6919161	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6919485	0.82[ASN][1000 genomes]
rs6923519	0.84[ASN][1000 genomes]
rs6925017	0.83[ASN][1000 genomes]
rs718112	0.86[ASN][1000 genomes]
rs720988	0.91[ASN][1000 genomes]
rs720989	0.88[ASN][1000 genomes]
rs72664272	0.86[ASN][1000 genomes]
rs72664273	0.88[ASN][1000 genomes]
rs72664274	0.89[ASN][1000 genomes]
rs7745506	0.84[EUR][1000 genomes]
rs7747642	0.84[ASN][1000 genomes]
rs7749865	0.84[ASN][1000 genomes]
rs7754378	0.86[ASN][1000 genomes]
rs7763421	0.85[ASN][1000 genomes]
rs7769218	0.91[ASN][1000 genomes]
rs7775717	0.82[ASN][1000 genomes]
rs9296450	0.94[ASN][1000 genomes]
rs9357464	0.81[ASN][1000 genomes]
rs9367211	0.85[ASN][1000 genomes]
rs9369516	0.84[ASN][1000 genomes]
rs9395051	0.80[ASN][1000 genomes]
rs9395055	0.84[ASN][1000 genomes]
rs9463039	0.87[ASN][1000 genomes]
rs9463040	0.87[ASN][1000 genomes]
rs9463054	0.82[ASN][1000 genomes]
rs9463055	0.82[ASN][1000 genomes]
rs9472376	0.89[ASN][1000 genomes]
rs9472407	0.84[ASN][1000 genomes]
rs9472409	0.83[ASN][1000 genomes]
rs9472411	0.84[ASN][1000 genomes]
rs9472414	0.96[ASN][1000 genomes]
rs9472416	0.82[ASN][1000 genomes]
rs976699	0.81[ASN][1000 genomes]
rs9885796	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885861	chr6:44837356-45043618	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033815	chr6:44845514-44938799	Enhancers Strong transcription Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv5286	chr6:44865290-44909915	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44859200-44889400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr6:44862600-44889400	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr6:44864800-44888400	Weak transcription	Primary T cells from cord blood	blood
4	chr6:44866600-44879600	Weak transcription	Pancreas	Pancrea
5	chr6:44868000-44874600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:44873200-44888000	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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