Variant report

Variant	rs3823252
Chromosome Location	chr6:44810418-44810419
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:44804801..44806639-chr6:44808524..44811401,2	K562	blood:

Extended variants
information (count: 130 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:130)

rs_ID	r²[population]
rs1023091	0.94[CHB][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs1028944	0.94[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs10484627	0.85[CHD][hapmap];0.83[JPT][hapmap]
rs10948185	0.91[CHD][hapmap]
rs10948187	0.89[CHD][hapmap]
rs10948188	0.89[CHD][hapmap]
rs10948190	0.89[CHD][hapmap]
rs10948194	0.89[CHD][hapmap]
rs10948197	0.89[CHD][hapmap]
rs1159131	0.86[CHD][hapmap]
rs12196818	0.86[CHD][hapmap]
rs12214778	0.89[CHD][hapmap]
rs12525773	0.87[ASN][1000 genomes]
rs12526711	0.83[JPT][hapmap]
rs12526755	0.87[ASN][1000 genomes]
rs12527908	0.91[ASN][1000 genomes]
rs12528232	0.94[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs12528762	0.94[CHB][hapmap];0.88[JPT][hapmap]
rs12529522	0.88[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs12530016	0.92[CEU][hapmap];0.88[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs12661902	0.86[ASN][1000 genomes]
rs12663530	0.88[ASN][1000 genomes]
rs12663798	0.87[ASN][1000 genomes]
rs13199289	0.82[ASN][1000 genomes]
rs13201942	0.94[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap]
rs13202672	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13205113	0.94[CHB][hapmap];0.88[JPT][hapmap]
rs13206526	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13209827	0.94[CHB][hapmap];0.88[JPT][hapmap]
rs13216116	0.89[CHD][hapmap]
rs13216967	0.85[ASN][1000 genomes]
rs1329710	0.89[CHD][hapmap]
rs1329713	0.89[CHD][hapmap]
rs1329715	0.94[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes]
rs1329716	0.91[CHD][hapmap]
rs1360195	0.94[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes]
rs1402599	0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1418435	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs16869119	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16872574	0.98[ASN][1000 genomes]
rs17422760	0.86[CHD][hapmap];0.83[JPT][hapmap]
rs1935549	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1980265	0.89[CHD][hapmap]
rs2139863	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs227852	1.00[CHB][hapmap];0.82[MEX][hapmap]
rs227853	1.00[CHB][hapmap];0.86[MEX][hapmap]
rs227857	0.84[ASN][1000 genomes]
rs2396369	0.89[CHD][hapmap]
rs2396372	0.92[CHD][hapmap]
rs2894599	0.98[ASN][1000 genomes]
rs34243039	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34286542	0.86[ASN][1000 genomes]
rs34577161	0.82[AMR][1000 genomes]
rs34776198	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34817919	0.98[ASN][1000 genomes]
rs35103634	0.87[ASN][1000 genomes]
rs35687006	0.94[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs35704584	0.87[ASN][1000 genomes]
rs35856781	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35908738	0.87[ASN][1000 genomes]
rs36105034	0.86[ASN][1000 genomes]
rs3778507	0.89[CHD][hapmap]
rs3799965	0.85[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3799966	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3799967	0.88[JPT][hapmap]
rs3799969	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3799970	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3799971	0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs3799972	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3799973	0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs3799974	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3799976	0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs3799977	0.89[CHD][hapmap];0.83[JPT][hapmap]
rs3799979	0.89[CHD][hapmap];0.83[JPT][hapmap]
rs3799984	0.83[JPT][hapmap]
rs3799986	0.89[CHD][hapmap]
rs3799987	0.94[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes]
rs3997503	0.86[ASN][1000 genomes]
rs4398713	0.89[CHD][hapmap]
rs4475320	0.87[ASN][1000 genomes]
rs4512220	0.94[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs4711797	0.81[AMR][1000 genomes]
rs4711809	0.88[CHB][hapmap];0.91[CHD][hapmap];0.84[ASN][1000 genomes]
rs4714812	1.00[CHB][hapmap];0.86[GIH][hapmap];0.82[JPT][hapmap];0.90[MEX][hapmap];0.86[TSI][hapmap];0.82[AMR][1000 genomes]
rs4714825	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4714827	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4714828	0.89[CHD][hapmap];0.83[JPT][hapmap]
rs4714829	0.87[ASN][1000 genomes]
rs4714830	0.89[CHD][hapmap]
rs4714834	0.94[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs494982	0.89[CHD][hapmap]
rs524492	0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs542444	1.00[ASW][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.95[MEX][hapmap];0.86[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs562016	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59945128	0.87[ASN][1000 genomes]
rs608941	0.89[CHD][hapmap]
rs609643	0.84[ASN][1000 genomes]
rs609699	0.84[ASN][1000 genomes]
rs636845	0.89[CHD][hapmap]
rs66642874	0.98[ASN][1000 genomes]
rs67597621	0.97[ASN][1000 genomes]
rs67911131	0.89[ASN][1000 genomes]
rs6904015	0.88[JPT][hapmap]
rs6904584	0.91[ASN][1000 genomes]
rs6910294	0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs6919161	0.94[CHB][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs720988	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs720989	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72664272	0.96[ASN][1000 genomes]
rs72664273	0.97[ASN][1000 genomes]
rs72664274	0.98[ASN][1000 genomes]
rs7746032	0.86[ASN][1000 genomes]
rs7754378	0.89[CHD][hapmap];0.83[JPT][hapmap]
rs7754698	0.86[JPT][hapmap]
rs7769218	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296450	0.92[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs9367211	0.83[CHD][hapmap];0.82[JPT][hapmap]
rs9369514	0.83[JPT][hapmap]
rs9369516	0.89[CHD][hapmap];0.83[JPT][hapmap]
rs9395051	0.89[CHD][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs9463017	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9463039	0.96[ASN][1000 genomes]
rs9463040	0.96[ASN][1000 genomes]
rs9472331	1.00[CHB][hapmap];0.82[JPT][hapmap];0.82[AMR][1000 genomes]
rs9472335	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9472376	0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9472407	0.82[JPT][hapmap]
rs9472409	0.89[CHD][hapmap]
rs9472414	0.92[CEU][hapmap];0.89[CHB][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes]
rs9885796	0.86[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs3823252	AARS2	cis	cerebellum	SCAN
rs3823252	SUPT3H	cis	multi-tissue	Pritchard
rs3823252	SUPT3H	cis	lymphoblastoid	seeQTL

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44792000-44811600	Weak transcription	Pancreas	Pancrea
2	chr6:44798200-44811200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr6:44798400-44822800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr6:44798600-44810600	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr6:44808600-44821000	Weak transcription	Primary T cells from cord blood	blood
6	chr6:44809600-44811200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:44810000-44811200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:44810400-44811200	Enhancers	Muscle Satellite Cultured Cells	--
9	chr6:44810400-44811200	Enhancers	Brain Cingulate Gyrus	brain

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