Variant report

Variant	rs34577161
Chromosome Location	chr6:44696401-44696402
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:44646457..44648183-chr6:44695917..44698549,2	MCF-7	breast:
2	chr6:44684410..44686836-chr6:44696222..44698062,2	MCF-7	breast:
3	chr6:44629008..44631084-chr6:44694856..44697069,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs13202672	0.82[AMR][1000 genomes]
rs13206206	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs13206526	0.82[AMR][1000 genomes]
rs1418435	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16869119	0.82[AMR][1000 genomes]
rs1935549	0.85[AMR][1000 genomes]
rs2139863	0.86[AMR][1000 genomes]
rs227830	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs227832	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs227833	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs227835	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs227836	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs227839	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs227840	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs227844	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs227845	0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs227849	0.84[ASN][1000 genomes]
rs227852	0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs227853	0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs227857	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs34243039	0.82[AMR][1000 genomes]
rs34776198	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs35376827	0.94[ASN][1000 genomes]
rs35856781	0.82[AMR][1000 genomes]
rs3799965	0.85[AMR][1000 genomes]
rs3799966	0.85[AMR][1000 genomes]
rs3799972	0.82[AMR][1000 genomes]
rs3799974	0.82[AMR][1000 genomes]
rs3823252	0.82[AMR][1000 genomes]
rs3997503	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4711797	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4714812	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4714825	0.85[AMR][1000 genomes]
rs4714827	0.81[AMR][1000 genomes]
rs562016	0.81[AMR][1000 genomes]
rs609643	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs609699	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs720988	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs720989	0.87[AMR][1000 genomes]
rs72664272	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7746032	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7769218	0.90[AMR][1000 genomes]
rs9463017	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9463039	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9463040	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9472331	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9472335	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817071	chr6:44670110-44698829	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44690400-44698000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr6:44693000-44698200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:44693200-44698400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:44694600-44698200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:44695800-44701000	Weak transcription	Pancreas	Pancrea
6	chr6:44695800-44703600	Weak transcription	Esophagus	oesophagus
7	chr6:44696000-44706000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:44696200-44698200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr6:44696200-44698200	Weak transcription	Placenta	Placenta
10	chr6:44696400-44698200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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