Variant report

Variant	rs609699
Chromosome Location	chr6:44705266-44705267
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:44702578..44705568-chr6:44706888..44709805,2	MCF-7	breast:
2	chr6:44629725..44631733-chr6:44703945..44706239,2	MCF-7	breast:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs13202672	0.83[ASN][1000 genomes]
rs13206206	0.86[ASN][1000 genomes]
rs1402599	0.84[ASN][1000 genomes]
rs1418435	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs16869119	0.82[ASN][1000 genomes]
rs16872574	0.84[ASN][1000 genomes]
rs1935549	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2139863	0.84[ASN][1000 genomes]
rs227830	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs227832	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs227833	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs227835	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs227836	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs227839	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs227840	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs227844	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs227845	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs227852	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs227853	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs227854	0.91[EUR][1000 genomes]
rs227857	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2894599	0.84[ASN][1000 genomes]
rs34243039	0.81[ASN][1000 genomes]
rs34577161	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs34776198	0.84[ASN][1000 genomes]
rs34817919	0.84[ASN][1000 genomes]
rs35376827	0.86[ASN][1000 genomes]
rs35856781	0.81[ASN][1000 genomes]
rs3799965	0.84[ASN][1000 genomes]
rs3799966	0.83[ASN][1000 genomes]
rs3799969	0.84[ASN][1000 genomes]
rs3799970	0.84[ASN][1000 genomes]
rs3799974	0.81[ASN][1000 genomes]
rs3823252	0.84[ASN][1000 genomes]
rs3997503	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4711797	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4714812	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4714813	0.92[EUR][1000 genomes]
rs4714825	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4714827	0.81[ASN][1000 genomes]
rs524492	0.82[ASN][1000 genomes]
rs542444	0.84[ASN][1000 genomes]
rs562016	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs609643	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66642874	0.84[ASN][1000 genomes]
rs67597621	0.82[ASN][1000 genomes]
rs687878	0.92[EUR][1000 genomes]
rs720988	0.84[ASN][1000 genomes]
rs720989	0.81[ASN][1000 genomes]
rs72664272	0.93[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs72664273	0.83[ASN][1000 genomes]
rs72664274	0.84[ASN][1000 genomes]
rs7746032	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7769218	0.84[ASN][1000 genomes]
rs9463017	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9463039	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9463040	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9472331	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9472335	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9472376	0.84[ASN][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44696000-44706000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:44701600-44705800	Weak transcription	Duodenum Mucosa	Duodenum
3	chr6:44702000-44705600	Weak transcription	Fetal Lung	lung
4	chr6:44702200-44705600	Weak transcription	Adipose Nuclei	Adipose
5	chr6:44703200-44705400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr6:44703600-44705400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:44703600-44705400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr6:44703800-44707200	Enhancers	GM12878-XiMat	blood
9	chr6:44703800-44708400	Weak transcription	Placenta	Placenta
10	chr6:44704000-44705400	Weak transcription	Rectal Smooth Muscle	rectum
11	chr6:44704000-44705600	Weak transcription	Fetal Thymus	thymus
12	chr6:44704000-44706000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr6:44704000-44706200	Weak transcription	NHEK	skin
14	chr6:44704200-44705400	Weak transcription	Colon Smooth Muscle	Colon
15	chr6:44704200-44706000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr6:44704400-44706400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr6:44705000-44707000	Enhancers	Fetal Stomach	stomach
18	chr6:44705200-44705400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr6:44705200-44707200	Enhancers	Fetal Brain Male	brain
20	chr6:44705200-44709400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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