Variant report

Variant	rs227854
Chromosome Location	chr6:44701035-44701036
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:44700126..44702193-chr6:45390797..45392676,2	MCF-7	breast:
2	chr6:44691206..44694141-chr6:44700242..44701897,2	K562	blood:
3	chr6:44700427..44702509-chr6:45388476..45390408,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000271857	Chromatin interaction
ENSG00000124813	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1022730	0.81[ASN][1000 genomes]
rs1022731	0.81[ASN][1000 genomes]
rs227830	0.82[EUR][1000 genomes]
rs227831	0.81[ASN][1000 genomes]
rs227832	0.82[EUR][1000 genomes]
rs227833	0.82[EUR][1000 genomes]
rs227835	0.82[EUR][1000 genomes]
rs227838	0.81[ASN][1000 genomes]
rs227839	0.85[EUR][1000 genomes]
rs227840	0.82[EUR][1000 genomes]
rs227841	0.83[ASN][1000 genomes]
rs227843	0.85[ASN][1000 genomes]
rs227844	0.89[EUR][1000 genomes]
rs227845	0.91[EUR][1000 genomes]
rs227847	0.86[ASN][1000 genomes]
rs227848	0.87[ASN][1000 genomes]
rs227850	0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs227851	0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs227852	0.84[CEU][hapmap];0.92[EUR][1000 genomes]
rs227853	0.84[CEU][hapmap];0.92[EUR][1000 genomes]
rs227855	0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs227857	0.91[EUR][1000 genomes]
rs3997503	0.91[EUR][1000 genomes]
rs4714813	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs609643	0.91[EUR][1000 genomes]
rs609699	0.91[EUR][1000 genomes]
rs687878	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6933373	0.87[ASN][1000 genomes]
rs7746032	0.91[EUR][1000 genomes]
rs9349303	0.82[JPT][hapmap]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44695800-44703600	Weak transcription	Esophagus	oesophagus
2	chr6:44696000-44706000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:44697800-44704200	Enhancers	Colon Smooth Muscle	Colon
4	chr6:44698200-44703800	Enhancers	Placenta	Placenta
5	chr6:44698600-44701200	Weak transcription	Fetal Lung	lung
6	chr6:44698600-44701200	Weak transcription	GM12878-XiMat	blood
7	chr6:44699200-44701600	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr6:44699200-44703200	Enhancers	Fetal Muscle Leg	muscle
9	chr6:44699400-44701400	Weak transcription	Duodenum Mucosa	Duodenum
10	chr6:44699400-44701800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:44699600-44701400	Weak transcription	Colonic Mucosa	Colon
12	chr6:44699800-44701600	Weak transcription	Fetal Kidney	kidney
13	chr6:44699800-44702600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr6:44699800-44703400	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr6:44700000-44701400	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr6:44700000-44701400	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr6:44700400-44701400	Weak transcription	HSMMtube	muscle
18	chr6:44701000-44701200	Enhancers	Fetal Muscle Trunk	muscle
19	chr6:44701000-44701200	Enhancers	Pancreas	Pancrea
20	chr6:44701000-44701200	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr6:44701000-44701400	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr6:44701000-44701600	Enhancers	Left Ventricle	heart
23	chr6:44701000-44702200	Enhancers	Adipose Nuclei	Adipose
24	chr6:44701000-44704000	Enhancers	Rectal Smooth Muscle	rectum
25	chr6:44701000-44704600	Enhancers	Fetal Stomach	stomach

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