Variant report

Variant	rs227855
Chromosome Location	chr6:44702352-44702353
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:44701864..44704579-chr6:44705649..44708324,2	K562	blood:
2	chr6:44639734..44641613-chr6:44701517..44703431,2	MCF-7	breast:
3	chr6:44700427..44702509-chr6:45388476..45390408,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000271857	Chromatin interaction
ENSG00000124813	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1022730	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1022731	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12215252	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1338907	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1342640	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1418433	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1832897	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2145826	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs227831	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs227837	0.99[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs227838	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs227841	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs227843	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs227847	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs227848	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs227849	0.92[CEU][hapmap];0.92[EUR][1000 genomes]
rs227850	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs227851	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs227854	0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs3799968	0.80[CEU][hapmap]
rs57020561	0.81[AMR][1000 genomes]
rs6458412	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6910294	0.85[CEU][hapmap]
rs911524	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9349303	0.84[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9369514	0.80[CEU][hapmap]
rs9369515	0.91[CHB][hapmap];0.82[JPT][hapmap];0.84[AMR][1000 genomes]
rs9463011	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9472339	0.91[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs227855	SUPT3H	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44695800-44703600	Weak transcription	Esophagus	oesophagus
2	chr6:44696000-44706000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:44697800-44704200	Enhancers	Colon Smooth Muscle	Colon
4	chr6:44698200-44703800	Enhancers	Placenta	Placenta
5	chr6:44699200-44703200	Enhancers	Fetal Muscle Leg	muscle
6	chr6:44699800-44702600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:44699800-44703400	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr6:44701000-44704000	Enhancers	Rectal Smooth Muscle	rectum
9	chr6:44701000-44704600	Enhancers	Fetal Stomach	stomach
10	chr6:44701200-44702600	Weak transcription	Fetal Muscle Trunk	muscle
11	chr6:44701200-44702800	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr6:44701200-44702800	Enhancers	GM12878-XiMat	blood
13	chr6:44701400-44702400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr6:44701400-44702400	Weak transcription	Spleen	Spleen
15	chr6:44701600-44705800	Weak transcription	Duodenum Mucosa	Duodenum
16	chr6:44701800-44702400	Enhancers	Duodenum Smooth Muscle	Duodenum
17	chr6:44701800-44704000	Enhancers	Fetal Thymus	thymus
18	chr6:44702000-44702400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:44702000-44705600	Weak transcription	Fetal Lung	lung
20	chr6:44702200-44702800	Enhancers	Stomach Smooth Muscle	stomach
21	chr6:44702200-44705600	Weak transcription	Adipose Nuclei	Adipose

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