Variant report

Variant	rs9472339
Chromosome Location	chr6:44711791-44711792
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:44705341..44707356-chr6:44711070..44712664,2	MCF-7	breast:

Extended variants
information (count: 58 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10807302	0.85[AFR][1000 genomes]
rs12190136	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12192367	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12197593	0.81[AFR][1000 genomes]
rs12204270	0.80[AFR][1000 genomes]
rs12215252	0.93[EUR][1000 genomes]
rs1293457	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1293467	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1338907	0.93[EUR][1000 genomes]
rs1342370	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1342640	0.92[EUR][1000 genomes]
rs1418433	0.91[EUR][1000 genomes]
rs1418434	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1557143	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1832897	0.91[EUR][1000 genomes]
rs1891411	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1891412	0.85[ASN][1000 genomes]
rs1935551	0.85[ASN][1000 genomes]
rs2038555	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2038556	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2038557	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2040032	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs227837	0.84[EUR][1000 genomes]
rs227838	0.88[EUR][1000 genomes]
rs227841	0.87[EUR][1000 genomes]
rs227845	0.80[ASN][1000 genomes]
rs227847	0.90[EUR][1000 genomes]
rs227848	0.92[EUR][1000 genomes]
rs227849	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs227850	0.92[EUR][1000 genomes]
rs227851	0.92[EUR][1000 genomes]
rs227852	0.80[ASN][1000 genomes]
rs227855	0.91[EUR][1000 genomes]
rs3799967	0.85[ASN][1000 genomes]
rs4711798	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4711799	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4714819	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4714820	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4714821	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4714822	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59881382	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6458412	0.93[EUR][1000 genomes]
rs6904015	0.85[ASN][1000 genomes]
rs6910294	0.83[ASN][1000 genomes]
rs6910749	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs71564699	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs764396	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs764397	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7754698	0.85[ASN][1000 genomes]
rs911524	0.91[EUR][1000 genomes]
rs929614	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9357459	0.85[ASN][1000 genomes]
rs9369512	0.85[ASN][1000 genomes]
rs9369513	0.85[ASN][1000 genomes]
rs9369514	0.85[ASN][1000 genomes]
rs9395049	0.82[ASN][1000 genomes]
rs9472336	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9472360	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9472339	SUPT3H	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44710000-44712400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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