Variant report

Variant	rs4714819
Chromosome Location	chr6:44735285-44735286
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 97 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs10484627	0.83[CHB][hapmap]
rs10948183	0.95[CHB][hapmap]
rs10948185	0.88[CHB][hapmap]
rs10948186	0.89[CHB][hapmap]
rs10948187	0.94[CHB][hapmap]
rs10948188	0.88[CHB][hapmap]
rs12190136	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12190513	0.94[CHB][hapmap]
rs12192367	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12196818	0.88[CHB][hapmap]
rs12214778	0.88[CHB][hapmap]
rs12525009	0.84[CHB][hapmap]
rs12526711	0.83[CHB][hapmap]
rs12529522	0.83[CHB][hapmap]
rs12530016	0.83[CHB][hapmap]
rs1293457	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1293467	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1329715	0.89[CHB][hapmap]
rs1342370	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1360195	0.89[CHB][hapmap]
rs1402599	0.89[CHB][hapmap]
rs1418434	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1521355	0.89[CHB][hapmap]
rs1557143	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs16869119	0.84[CHB][hapmap]
rs17422760	0.83[CHB][hapmap]
rs1891411	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1891412	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1935551	0.94[ASN][1000 genomes]
rs1980265	0.94[CHB][hapmap]
rs2038555	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2038556	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2038557	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2040032	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2139863	0.84[CHB][hapmap]
rs227849	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs227852	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs227853	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs3778507	0.94[CHB][hapmap]
rs3799965	0.83[CHB][hapmap]
rs3799967	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs3799968	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs3799971	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs3799972	0.84[CHB][hapmap]
rs3799973	0.94[CHB][hapmap];0.82[ASN][1000 genomes]
rs3799974	0.84[CHB][hapmap]
rs3799976	0.89[CHB][hapmap]
rs3799977	0.88[CHB][hapmap]
rs3799979	0.88[CHB][hapmap]
rs3799981	0.89[CHB][hapmap]
rs3799984	0.89[CHB][hapmap]
rs3799986	0.88[CHB][hapmap]
rs3799987	0.89[CHB][hapmap]
rs3823252	0.83[CHB][hapmap]
rs4512220	0.89[CHB][hapmap]
rs4711798	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4711799	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4711807	0.89[CHB][hapmap]
rs4714812	0.83[CHB][hapmap];0.89[JPT][hapmap]
rs4714820	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4714821	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4714822	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4714828	0.88[CHB][hapmap]
rs524492	0.89[CHB][hapmap]
rs538801	0.89[CHB][hapmap]
rs542444	0.83[CHB][hapmap]
rs59881382	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs608941	0.88[CHB][hapmap]
rs6458415	0.95[CHB][hapmap]
rs6904015	1.00[CHB][hapmap];0.83[JPT][hapmap];0.94[ASN][1000 genomes]
rs6910294	0.95[CHB][hapmap];0.92[ASN][1000 genomes]
rs6910749	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6919161	0.89[CHB][hapmap]
rs71564699	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs764396	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs764397	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7749865	0.89[CHB][hapmap]
rs7754378	0.94[CHB][hapmap]
rs7754698	1.00[CHB][hapmap];0.87[JPT][hapmap];0.94[ASN][1000 genomes]
rs7763421	0.81[CHB][hapmap]
rs7769218	0.83[CHB][hapmap]
rs929614	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9357459	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9367208	0.82[ASN][1000 genomes]
rs9369512	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9369513	0.94[ASN][1000 genomes]
rs9369514	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs9369516	0.94[CHB][hapmap]
rs9395049	0.94[CHB][hapmap];0.91[ASN][1000 genomes]
rs9395051	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs9472331	0.84[CHB][hapmap];0.89[JPT][hapmap]
rs9472336	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9472339	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9472360	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9472376	0.88[CHB][hapmap]
rs9472407	0.94[CHB][hapmap]
rs9472409	0.94[CHB][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4714819	SUPT3H	cis	multi-tissue	Pritchard

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44734800-44739600	Weak transcription	HSMMtube	muscle

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