Variant report

Variant	rs1935551
Chromosome Location	chr6:44786035-44786036
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 112 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:111)

rs_ID	r²[population]
rs1041333	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10484627	0.81[ASN][1000 genomes]
rs10948183	0.81[ASN][1000 genomes]
rs10948186	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10948187	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10948190	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10948194	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10948195	0.85[EUR][1000 genomes]
rs12190136	0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12191518	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12192367	0.95[ASN][1000 genomes]
rs12209076	0.81[ASN][1000 genomes]
rs12525009	0.81[ASN][1000 genomes]
rs12526711	0.81[ASN][1000 genomes]
rs1293457	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1293467	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1293598	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13199289	0.81[ASN][1000 genomes]
rs1329716	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1342370	0.95[ASN][1000 genomes]
rs1360196	0.85[EUR][1000 genomes]
rs1402599	0.80[ASN][1000 genomes]
rs1418434	0.95[ASN][1000 genomes]
rs1557143	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1576382	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16872574	0.80[ASN][1000 genomes]
rs17422760	0.81[ASN][1000 genomes]
rs1854547	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1891411	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1891412	0.91[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1980265	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2038555	0.93[ASN][1000 genomes]
rs2038556	0.95[ASN][1000 genomes]
rs2038557	0.95[ASN][1000 genomes]
rs2040032	0.95[ASN][1000 genomes]
rs2145826	0.84[EUR][1000 genomes]
rs227849	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2396370	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2396371	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2894599	0.80[ASN][1000 genomes]
rs34817919	0.80[ASN][1000 genomes]
rs3778507	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3799967	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3799968	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3799971	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3799973	0.86[ASN][1000 genomes]
rs3799976	0.82[ASN][1000 genomes]
rs3799977	0.81[ASN][1000 genomes]
rs3799978	0.88[EUR][1000 genomes]
rs3799981	0.81[ASN][1000 genomes]
rs3846896	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4711798	0.95[ASN][1000 genomes]
rs4711799	0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4711803	0.81[ASN][1000 genomes]
rs4714819	0.94[ASN][1000 genomes]
rs4714820	0.93[ASN][1000 genomes]
rs4714821	0.92[ASN][1000 genomes]
rs4714822	0.95[ASN][1000 genomes]
rs494982	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs500773	0.81[ASN][1000 genomes]
rs538801	0.81[ASN][1000 genomes]
rs567054	0.81[EUR][1000 genomes]
rs57020561	0.87[EUR][1000 genomes]
rs588848	0.81[ASN][1000 genomes]
rs59881382	0.85[ASN][1000 genomes]
rs608941	0.81[ASN][1000 genomes]
rs636845	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6458415	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs66642874	0.80[ASN][1000 genomes]
rs6903576	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6904015	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6910294	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6910749	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6919485	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6923519	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6940547	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs71564699	0.82[ASN][1000 genomes]
rs718112	0.81[ASN][1000 genomes]
rs72664274	0.80[ASN][1000 genomes]
rs764396	0.85[ASN][1000 genomes]
rs764397	0.85[ASN][1000 genomes]
rs7754378	0.81[ASN][1000 genomes]
rs7754698	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7763421	0.81[ASN][1000 genomes]
rs929614	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9296448	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9349303	0.94[EUR][1000 genomes]
rs9357459	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9357464	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9367208	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9367211	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9369512	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9369513	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9369514	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9369515	0.94[EUR][1000 genomes]
rs9369516	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9369519	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs9369523	0.88[EUR][1000 genomes]
rs9395049	0.98[ASN][1000 genomes]
rs9395051	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9395055	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9463054	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9463055	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9472336	0.85[ASN][1000 genomes]
rs9472339	0.85[ASN][1000 genomes]
rs9472360	0.95[ASN][1000 genomes]
rs9472376	0.80[ASN][1000 genomes]
rs9472383	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9472403	0.88[EUR][1000 genomes]
rs9472418	0.82[EUR][1000 genomes]
rs976699	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1842105	chr6:44783457-44798701	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1935551	SUPT3H	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44777400-44796600	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr6:44779600-44796200	Weak transcription	Primary T cells from cord blood	blood
3	chr6:44779600-44796600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr6:44779600-44796800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr6:44779600-44796800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr6:44780000-44798400	Weak transcription	Dnd41	blood
7	chr6:44784400-44788000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:44785200-44795200	Weak transcription	Aorta	Aorta
9	chr6:44785200-44796800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr6:44785800-44796400	Weak transcription	Primary hematopoietic stem cells	blood

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