Variant report

Variant	rs9296448
Chromosome Location	chr6:44838479-44838480
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs1041333	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10948186	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10948187	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10948190	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10948194	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12191518	0.83[EUR][1000 genomes]
rs12209076	0.81[ASN][1000 genomes]
rs1293467	0.80[EUR][1000 genomes]
rs1293598	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1576382	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17422760	0.80[ASN][1000 genomes]
rs1854547	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1935551	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1980265	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2396370	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2396371	0.82[EUR][1000 genomes]
rs3778507	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3799967	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3799968	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3799971	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3799976	0.82[ASN][1000 genomes]
rs3799977	0.82[ASN][1000 genomes]
rs3799978	0.84[EUR][1000 genomes]
rs3846896	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3957281	0.81[ASN][1000 genomes]
rs4711803	0.81[ASN][1000 genomes]
rs4711805	0.81[ASN][1000 genomes]
rs472672	0.80[ASN][1000 genomes]
rs494982	0.82[EUR][1000 genomes]
rs500773	0.81[ASN][1000 genomes]
rs538801	0.80[ASN][1000 genomes]
rs57020561	0.82[EUR][1000 genomes]
rs608941	0.80[ASN][1000 genomes]
rs636845	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6458415	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6903576	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6904015	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6910294	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6910749	0.81[EUR][1000 genomes]
rs6919485	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6923519	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6940547	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs718112	0.82[ASN][1000 genomes]
rs7747642	0.80[ASN][1000 genomes]
rs7754378	0.82[ASN][1000 genomes]
rs7754698	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs929614	0.81[EUR][1000 genomes]
rs9349303	0.83[EUR][1000 genomes]
rs9357459	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9357464	0.83[EUR][1000 genomes]
rs9367208	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9367211	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9369512	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9369513	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9369514	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9369515	0.83[EUR][1000 genomes]
rs9369516	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9369519	0.84[AMR][1000 genomes]
rs9369523	0.81[EUR][1000 genomes]
rs9395051	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9395055	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9463054	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9463055	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9472383	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9472403	0.81[EUR][1000 genomes]
rs976699	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885861	chr6:44837356-45043618	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9296448	SUPT3H	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44833600-44849400	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr6:44838200-44848800	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr6:44838400-44854200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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