Variant report

Variant	rs17422760
Chromosome Location	chr6:44885288-44885289
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:44874731..44877061-chr6:44885216..44887016,2	K562	blood:
2	chr6:44878819..44880569-chr6:44884458..44887437,2	MCF-7	breast:
3	chr6:44879682..44885595-chr6:44885746..44891635,7	K562	blood:

Extended variants
information (count: 246 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:238)

rs_ID	r²[population]
rs1023090	0.84[CHB][hapmap];0.94[JPT][hapmap]
rs1023091	0.83[JPT][hapmap]
rs1028944	0.85[CHD][hapmap];0.83[JPT][hapmap]
rs1041332	0.89[CHB][hapmap];0.89[CHD][hapmap];0.94[JPT][hapmap]
rs1041333	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10456119	0.98[ASN][1000 genomes]
rs10484627	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10948183	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.88[YRI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10948185	0.95[CHB][hapmap];0.97[CHD][hapmap];0.81[GIH][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs10948186	0.94[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10948187	0.90[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.95[MEX][hapmap];0.81[TSI][hapmap];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10948188	0.93[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10948190	0.90[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.95[MEX][hapmap];0.81[TSI][hapmap];0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10948193	0.90[ASN][1000 genomes]
rs10948194	0.90[CHB][hapmap];0.97[CHD][hapmap];0.89[JPT][hapmap];0.95[MEX][hapmap];0.89[ASN][1000 genomes]
rs10948196	0.83[YRI][hapmap]
rs10948197	0.95[CHB][hapmap];0.97[CHD][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs10948198	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs1150806	0.91[ASN][1000 genomes]
rs11524119	0.84[ASN][1000 genomes]
rs1159131	0.93[ASW][hapmap];0.92[CEU][hapmap];0.89[CHD][hapmap];0.97[GIH][hapmap];0.89[JPT][hapmap];0.95[LWK][hapmap];0.94[MKK][hapmap];0.95[TSI][hapmap];0.91[YRI][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11964325	0.89[CHB][hapmap];0.89[CHD][hapmap];0.94[JPT][hapmap]
rs11966936	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs11967188	0.94[CHB][hapmap];0.88[JPT][hapmap];0.90[ASN][1000 genomes]
rs12190136	0.81[ASN][1000 genomes]
rs12190513	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12191518	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12192367	0.83[CHB][hapmap]
rs12196818	0.95[CHB][hapmap];0.94[CHD][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs12197442	0.86[ASN][1000 genomes]
rs12198904	0.96[ASN][1000 genomes]
rs12200412	0.86[ASN][1000 genomes]
rs12205071	0.89[CHB][hapmap];0.89[CHD][hapmap];0.94[JPT][hapmap]
rs12207620	0.95[ASN][1000 genomes]
rs12208023	0.89[CHB][hapmap];0.89[CHD][hapmap];0.94[JPT][hapmap]
rs12209076	0.96[ASN][1000 genomes]
rs12214778	0.95[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs12524069	0.94[ASN][1000 genomes]
rs12525009	0.89[CHB][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs12525773	0.83[ASN][1000 genomes]
rs12526649	0.83[JPT][hapmap]
rs12526711	1.00[CHB][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs12526755	0.83[ASN][1000 genomes]
rs12527908	0.86[ASN][1000 genomes]
rs12528232	0.86[CHD][hapmap];0.83[JPT][hapmap]
rs12528762	0.83[JPT][hapmap]
rs12529490	0.83[CHB][hapmap];0.94[JPT][hapmap]
rs12529522	0.89[CHD][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs12529990	0.83[JPT][hapmap]
rs12530016	0.89[CHD][hapmap];0.89[JPT][hapmap];0.88[YRI][hapmap];0.85[ASN][1000 genomes]
rs12661902	0.81[ASN][1000 genomes]
rs12663530	0.83[ASN][1000 genomes]
rs12663798	0.83[ASN][1000 genomes]
rs1284972	0.84[CHB][hapmap];0.94[JPT][hapmap]
rs1284986	0.83[JPT][hapmap]
rs1284987	0.89[CHB][hapmap];0.89[CHD][hapmap];0.94[JPT][hapmap]
rs1284988	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs1284992	0.89[CHB][hapmap];0.86[CHD][hapmap];0.94[JPT][hapmap]
rs1293457	0.81[ASN][1000 genomes]
rs1293467	0.81[ASN][1000 genomes]
rs1293598	0.97[ASN][1000 genomes]
rs1293600	0.91[ASN][1000 genomes]
rs13196587	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13199289	0.88[ASN][1000 genomes]
rs13201942	0.86[CHD][hapmap];0.83[JPT][hapmap]
rs13202529	0.82[ASN][1000 genomes]
rs13203495	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13205113	0.83[JPT][hapmap]
rs13206526	0.86[CHD][hapmap];0.83[JPT][hapmap]
rs13209827	0.83[JPT][hapmap]
rs13211006	0.82[JPT][hapmap]
rs13211229	0.90[ASN][1000 genomes]
rs13213412	0.96[ASN][1000 genomes]
rs13215618	1.00[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.88[YRI][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13216116	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.98[TSI][hapmap];0.88[YRI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13216967	0.81[ASN][1000 genomes]
rs1324532	0.83[CHB][hapmap];0.86[CHD][hapmap];0.94[JPT][hapmap]
rs1329710	0.95[CHB][hapmap];0.97[CHD][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs1329713	0.90[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs1329714	0.93[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs1329715	0.86[CHD][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs1329716	0.90[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.95[MEX][hapmap];0.88[MKK][hapmap];0.81[TSI][hapmap];0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1360195	0.86[CHD][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs1360197	0.95[CHB][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes]
rs1402599	0.83[CHD][hapmap];0.83[JPT][hapmap]
rs1411148	0.89[CHB][hapmap];0.89[CHD][hapmap];0.94[JPT][hapmap]
rs1521355	0.95[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs1557143	0.81[ASN][1000 genomes]
rs1576382	0.89[ASN][1000 genomes]
rs1578676	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1590864	0.95[ASN][1000 genomes]
rs16869119	0.83[JPT][hapmap]
rs17339124	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17424547	0.95[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs1831310	0.86[ASN][1000 genomes]
rs1854547	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1886345	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1891411	0.81[ASN][1000 genomes]
rs1891412	0.81[ASN][1000 genomes]
rs1935551	0.81[ASN][1000 genomes]
rs1937046	0.89[CHB][hapmap];0.89[CHD][hapmap];0.94[JPT][hapmap]
rs1971482	0.95[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs1980265	0.90[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];0.81[TSI][hapmap];0.90[ASN][1000 genomes]
rs2139863	0.83[JPT][hapmap]
rs2186062	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs227849	0.84[CHB][hapmap];0.82[MEX][hapmap]
rs2396369	0.95[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs2396370	0.90[ASN][1000 genomes]
rs2396371	0.89[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2396372	0.95[CHB][hapmap];0.94[CHD][hapmap];0.89[JPT][hapmap];0.90[ASN][1000 genomes]
rs2396375	0.81[ASN][1000 genomes]
rs34243039	0.80[ASN][1000 genomes]
rs34286542	0.82[ASN][1000 genomes]
rs34808716	0.98[ASN][1000 genomes]
rs34982599	0.89[ASN][1000 genomes]
rs35103634	0.83[ASN][1000 genomes]
rs35357222	0.90[ASN][1000 genomes]
rs35687006	0.86[CHD][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs35704584	0.83[ASN][1000 genomes]
rs35813980	0.90[ASN][1000 genomes]
rs35856781	0.80[ASN][1000 genomes]
rs35908738	0.82[ASN][1000 genomes]
rs36105034	0.82[ASN][1000 genomes]
rs3778507	0.90[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.95[MEX][hapmap];0.81[TSI][hapmap];0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3799965	0.83[CHD][hapmap];0.83[JPT][hapmap]
rs3799967	0.88[CHB][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs3799968	0.84[CHB][hapmap];0.95[MEX][hapmap];0.81[TSI][hapmap]
rs3799971	0.84[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs3799972	0.83[JPT][hapmap]
rs3799973	0.96[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs3799974	0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs3799976	0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs3799977	0.81[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs3799979	0.95[CHB][hapmap];0.97[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs3799981	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.88[YRI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3799984	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3799986	0.95[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs3799987	0.86[CHD][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs3823252	0.86[CHD][hapmap];0.83[JPT][hapmap]
rs3846896	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs3957281	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4398713	0.95[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs4412189	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs4475320	0.83[ASN][1000 genomes]
rs4512220	0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs4711799	0.81[ASN][1000 genomes]
rs4711803	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4711805	0.98[ASN][1000 genomes]
rs4711807	0.95[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs4711809	0.82[CHB][hapmap]
rs4714821	0.81[ASN][1000 genomes]
rs4714827	0.80[ASN][1000 genomes]
rs4714828	0.95[CHB][hapmap];0.97[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4714829	0.83[ASN][1000 genomes]
rs4714830	0.95[CHB][hapmap];0.97[CHD][hapmap];0.89[JPT][hapmap];0.90[ASN][1000 genomes]
rs4714832	0.87[ASN][1000 genomes]
rs4714834	0.86[CHD][hapmap];0.83[JPT][hapmap]
rs4714836	0.89[CHB][hapmap];0.89[CHD][hapmap];0.94[JPT][hapmap]
rs472672	0.92[ASN][1000 genomes]
rs472673	0.90[ASN][1000 genomes]
rs494982	0.90[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.95[MEX][hapmap];0.85[MKK][hapmap];0.81[TSI][hapmap];0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs500773	0.98[ASN][1000 genomes]
rs524492	0.83[CHD][hapmap];0.83[JPT][hapmap]
rs538801	0.95[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs542444	0.83[CHD][hapmap];0.83[JPT][hapmap]
rs55893720	0.90[ASN][1000 genomes]
rs567054	0.88[ASN][1000 genomes]
rs588848	0.95[ASN][1000 genomes]
rs59945128	0.83[ASN][1000 genomes]
rs608941	0.95[CHB][hapmap];0.97[CHD][hapmap];0.89[JPT][hapmap];0.97[ASN][1000 genomes]
rs62438007	0.96[ASN][1000 genomes]
rs62438011	0.83[ASN][1000 genomes]
rs636845	0.93[ASW][hapmap];0.90[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.85[LWK][hapmap];0.95[MEX][hapmap];0.89[MKK][hapmap];0.81[TSI][hapmap];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6458414	0.94[ASN][1000 genomes]
rs6458415	0.90[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6458419	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs67001335	0.80[ASN][1000 genomes]
rs67911131	0.84[ASN][1000 genomes]
rs679713	0.94[ASN][1000 genomes]
rs6899378	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs6899845	0.89[CHB][hapmap];0.89[CHD][hapmap];0.94[JPT][hapmap];0.81[TSI][hapmap]
rs6903576	0.95[ASN][1000 genomes]
rs6904015	0.83[CHB][hapmap];0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs6904584	0.86[ASN][1000 genomes]
rs6910294	0.89[CHB][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs6910749	0.81[ASN][1000 genomes]
rs6919161	0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs6919485	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6922660	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs6922772	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs6923519	0.97[ASN][1000 genomes]
rs6925017	0.94[CHB][hapmap];0.87[JPT][hapmap];0.89[ASN][1000 genomes]
rs6925467	0.95[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs718112	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7739928	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs7742360	0.95[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs7745506	0.82[JPT][hapmap]
rs7747642	0.95[ASN][1000 genomes]
rs7749865	0.94[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs7754378	0.93[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7754698	0.83[CHB][hapmap];0.81[ASN][1000 genomes]
rs7763421	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[YRI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7763450	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs7769218	0.81[JPT][hapmap]
rs7775717	0.95[CHB][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs929614	0.81[ASN][1000 genomes]
rs9296448	0.80[ASN][1000 genomes]
rs9296450	0.86[CHD][hapmap];0.82[ASN][1000 genomes]
rs9357459	0.81[ASN][1000 genomes]
rs9357464	0.94[CHB][hapmap];0.89[JPT][hapmap];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9357469	0.84[CHB][hapmap];0.94[JPT][hapmap]
rs9357470	0.84[CHB][hapmap];0.94[JPT][hapmap]
rs9367208	0.88[ASN][1000 genomes]
rs9367211	0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.83[TSI][hapmap];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9367214	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs9369512	0.81[ASN][1000 genomes]
rs9369513	0.81[ASN][1000 genomes]
rs9369514	0.84[CHB][hapmap];0.89[JPT][hapmap];0.91[MEX][hapmap];0.81[TSI][hapmap];0.82[ASN][1000 genomes]
rs9369516	0.90[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.81[TSI][hapmap];0.97[ASN][1000 genomes]
rs9369529	0.95[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs9381365	0.89[CHB][hapmap];0.89[CHD][hapmap];0.94[JPT][hapmap]
rs9395049	0.89[CHB][hapmap];0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs9395051	0.84[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.95[MEX][hapmap];0.81[TSI][hapmap];0.93[ASN][1000 genomes]
rs9395055	0.96[ASN][1000 genomes]
rs9395058	0.80[ASN][1000 genomes]
rs9395065	0.88[CHB][hapmap];0.94[JPT][hapmap]
rs9463054	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9463055	0.89[ASN][1000 genomes]
rs9472376	0.83[CHD][hapmap];0.83[JPT][hapmap]
rs9472383	0.85[ASN][1000 genomes]
rs9472407	1.00[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9472409	1.00[CEU][hapmap];0.90[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.95[TSI][hapmap];0.88[YRI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9472411	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9472414	0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs9472416	1.00[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs969211	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs976699	0.89[CHB][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs9885796	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885861	chr6:44837356-45043618	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033815	chr6:44845514-44938799	Enhancers Strong transcription Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv5286	chr6:44865290-44909915	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
5	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
6	nsv1024370	chr6:44878053-45251451	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
7	esv2758051	chr6:44879791-45056758	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv2759423	chr6:44879791-45056758	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs17422760	SUPT3H	cis	lymphoblastoid	seeQTL
rs17422760	SUPT3H	cis	cerebellum	SCAN
rs17422760	SUPT3H	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44859200-44889400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr6:44862600-44889400	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr6:44864800-44888400	Weak transcription	Primary T cells from cord blood	blood
4	chr6:44873200-44888000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr6:44874800-44889400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr6:44875000-44888800	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr6:44877800-44892800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr6:44879000-44888000	Weak transcription	HepG2	liver
9	chr6:44880600-44888000	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr6:44881000-44894600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:44882400-44886400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:44883800-44886400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:44885000-44885400	Enhancers	Fetal Heart	heart
14	chr6:44885200-44885600	Enhancers	Fetal Stomach	stomach

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