Variant report

Variant	rs9369515
Chromosome Location	chr6:44812515-44812516
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CDC5L-7	chr6:44811739-44813069	ucscGeneNc_uc003oxm_2

Extended variants
information (count: 76 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs1041333	0.84[EUR][1000 genomes]
rs10948186	0.85[EUR][1000 genomes]
rs10948187	0.86[EUR][1000 genomes]
rs10948190	0.85[EUR][1000 genomes]
rs10948194	0.85[EUR][1000 genomes]
rs10948195	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12191518	0.85[EUR][1000 genomes]
rs12215252	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1293457	0.84[EUR][1000 genomes]
rs1293467	0.85[EUR][1000 genomes]
rs1293598	0.86[EUR][1000 genomes]
rs1329716	0.81[EUR][1000 genomes]
rs1338907	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1342640	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1360196	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1418433	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1557143	0.83[EUR][1000 genomes]
rs1576382	0.85[EUR][1000 genomes]
rs1832897	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1854547	0.85[EUR][1000 genomes]
rs1891411	0.84[EUR][1000 genomes]
rs1935551	0.94[EUR][1000 genomes]
rs1980265	0.82[EUR][1000 genomes]
rs2145826	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs227837	0.85[AMR][1000 genomes]
rs227838	0.85[AMR][1000 genomes]
rs227841	0.84[AMR][1000 genomes]
rs227847	0.84[AMR][1000 genomes]
rs227848	0.84[AMR][1000 genomes]
rs227850	0.91[CHB][hapmap];0.84[AMR][1000 genomes]
rs227851	0.91[CHB][hapmap];0.81[JPT][hapmap];0.81[AMR][1000 genomes]
rs227855	0.91[CHB][hapmap];0.82[JPT][hapmap];0.84[AMR][1000 genomes]
rs2396370	0.85[EUR][1000 genomes]
rs2396371	0.84[EUR][1000 genomes]
rs2396373	0.91[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3778507	0.85[EUR][1000 genomes]
rs3799967	0.94[EUR][1000 genomes]
rs3799968	0.94[EUR][1000 genomes]
rs3799971	0.93[EUR][1000 genomes]
rs3799978	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3846896	0.93[EUR][1000 genomes]
rs494982	0.83[EUR][1000 genomes]
rs57020561	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs636845	0.83[EUR][1000 genomes]
rs6458412	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6458415	0.88[EUR][1000 genomes]
rs6903576	0.89[EUR][1000 genomes]
rs6904015	0.94[EUR][1000 genomes]
rs6910294	0.94[EUR][1000 genomes]
rs6910749	0.86[EUR][1000 genomes]
rs6919485	0.84[EUR][1000 genomes]
rs6923519	0.87[EUR][1000 genomes]
rs6940547	0.80[EUR][1000 genomes]
rs7754698	0.92[EUR][1000 genomes]
rs911524	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs929614	0.86[EUR][1000 genomes]
rs9296448	0.83[EUR][1000 genomes]
rs9349303	0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9357459	0.94[EUR][1000 genomes]
rs9357464	0.85[EUR][1000 genomes]
rs9367208	0.91[EUR][1000 genomes]
rs9367211	0.88[EUR][1000 genomes]
rs9369512	0.91[EUR][1000 genomes]
rs9369513	0.94[EUR][1000 genomes]
rs9369514	0.96[EUR][1000 genomes]
rs9369516	0.92[EUR][1000 genomes]
rs9369523	0.90[CHB][hapmap];0.86[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9381359	0.95[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs9395051	0.92[EUR][1000 genomes]
rs9395055	0.88[EUR][1000 genomes]
rs9463054	0.85[EUR][1000 genomes]
rs9463055	0.84[EUR][1000 genomes]
rs9472383	0.92[EUR][1000 genomes]
rs9472403	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9472418	0.87[CHB][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs976699	0.85[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9369515	SUPT3H	cis	multi-tissue	Pritchard
rs9369515	SUPT3H	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44798400-44822800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr6:44808600-44821000	Weak transcription	Primary T cells from cord blood	blood
3	chr6:44811200-44814200	Weak transcription	Right Atrium	heart
4	chr6:44812200-44813400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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