Variant report

Variant	rs911524
Chromosome Location	chr6:44747204-44747205
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1022730	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1022731	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12215252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1338907	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1342640	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1418433	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1832897	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2145826	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs227831	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs227837	0.99[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs227838	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs227841	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs227843	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs227847	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs227848	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs227849	0.90[EUR][1000 genomes]
rs227850	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs227851	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs227854	0.90[JPT][hapmap]
rs227855	0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57020561	0.81[AMR][1000 genomes]
rs6458412	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9349303	0.91[CHB][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9369515	0.91[CHB][hapmap];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9369523	0.95[CHB][hapmap]
rs9463011	0.81[AMR][1000 genomes]
rs9472339	0.91[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs911524	SUPT3H	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44740000-44752000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr6:44746400-44748200	Enhancers	GM12878-XiMat	blood
3	chr6:44746800-44748000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:44746800-44748200	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr6:44746800-44748400	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr6:44747000-44747800	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr6:44747000-44748000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr6:44747000-44748000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr6:44747200-44747600	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr6:44747200-44747800	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr6:44747200-44748000	Enhancers	Primary B cells from peripheral blood	blood

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