Variant report

Variant	rs12215252
Chromosome Location	chr6:44736265-44736266
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1022730	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1022731	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1338907	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1342640	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1418433	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1832897	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2145826	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs227831	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs227837	0.99[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs227838	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs227841	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs227843	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs227847	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs227848	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs227849	0.92[CEU][hapmap];0.93[EUR][1000 genomes]
rs227850	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs227851	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs227854	0.90[JPT][hapmap]
rs227855	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3799968	0.81[CEU][hapmap]
rs57020561	0.81[AMR][1000 genomes]
rs6458412	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6910294	0.85[CEU][hapmap]
rs911524	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9349303	0.85[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9369514	0.81[CEU][hapmap]
rs9369515	0.91[CHB][hapmap];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9369523	0.85[CEU][hapmap];0.95[CHB][hapmap]
rs9463011	0.81[AMR][1000 genomes]
rs9472339	0.93[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs12215252	SUPT3H	Cis_1M	lymphoblastoid	RTeQTL
rs12215252	SUPT3H	cis	multi-tissue	Pritchard

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44734800-44739600	Weak transcription	HSMMtube	muscle
2	chr6:44735600-44736600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr6:44735800-44736400	Enhancers	Fetal Thymus	thymus
4	chr6:44736000-44737600	Enhancers	Primary T cells from cord blood	blood
5	chr6:44736200-44737200	Weak transcription	Dnd41	blood

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