Variant report

Variant	rs9369519
Chromosome Location	chr6:44844282-44844283
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1041333	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10948186	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10948187	0.82[AMR][1000 genomes]
rs10948190	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs10948194	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12191518	0.82[AFR][1000 genomes]
rs1293467	0.81[AFR][1000 genomes]
rs1576382	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1854547	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1935551	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs1980265	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2396370	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs3778507	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs3799967	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs3799968	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs3799971	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs3846896	0.89[AMR][1000 genomes]
rs636845	0.81[AMR][1000 genomes]
rs6458415	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6903576	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs6904015	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs6910294	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs6910749	0.83[AFR][1000 genomes]
rs6919485	0.82[AMR][1000 genomes]
rs6923519	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs6940547	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs7754698	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs929614	0.81[AFR][1000 genomes]
rs9296448	0.84[AMR][1000 genomes]
rs9357459	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs9367208	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs9367211	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs9369512	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs9369513	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9369514	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs9369516	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs9395051	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs9395055	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs9463054	0.82[AMR][1000 genomes]
rs9463055	0.82[AFR][1000 genomes]
rs9472383	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs976699	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885861	chr6:44837356-45043618	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3384988	chr6:44840124-44845422	Weak transcription	n/a	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9369519	SUPT3H	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44833600-44849400	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr6:44838200-44848800	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr6:44838400-44854200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:44844200-44847800	Weak transcription	Dnd41	blood

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