Variant report

Variant	rs227833
Chromosome Location	chr6:44681840-44681841
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:44681475..44683976-chr6:44685935..44688011,2	K562	blood:
2	chr6:44681103..44683539-chr6:44690355..44693257,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs13206206	0.99[ASN][1000 genomes]
rs1418435	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs227827	0.84[ASN][1000 genomes]
rs227830	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs227832	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs227835	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs227836	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs227839	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs227840	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs227844	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs227845	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs227852	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs227853	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs227854	0.82[EUR][1000 genomes]
rs227857	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34577161	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs35376827	0.99[ASN][1000 genomes]
rs3997503	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4711797	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4714812	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4714813	0.81[EUR][1000 genomes]
rs609643	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs609699	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs687878	0.82[EUR][1000 genomes]
rs72664272	0.88[AMR][1000 genomes]
rs7746032	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9463017	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9463039	0.83[AMR][1000 genomes]
rs9463040	0.83[AMR][1000 genomes]
rs9472331	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9472335	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817071	chr6:44670110-44698829	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44667200-44691000	Weak transcription	Right Atrium	heart
2	chr6:44679400-44683600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:44679600-44682400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:44679800-44682200	Enhancers	Fetal Muscle Leg	muscle
5	chr6:44680800-44682200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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