Variant report

Variant	rs1418435
Chromosome Location	chr6:44710880-44710881
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:44709340..44711190-chr6:45455747..45458398,2	K562	blood:

Extended variants
information (count: 77 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10484627	0.80[CHD][hapmap]
rs10948185	0.86[CHD][hapmap]
rs12192367	0.83[JPT][hapmap]
rs12529522	0.88[CHB][hapmap];0.91[CHD][hapmap];0.82[JPT][hapmap]
rs12530016	0.88[CHB][hapmap];0.91[CHD][hapmap];0.82[JPT][hapmap]
rs13202672	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs13206206	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13206526	0.94[CHB][hapmap];0.94[CHD][hapmap];0.91[GIH][hapmap];0.88[JPT][hapmap];0.90[MEX][hapmap];0.84[TSI][hapmap];0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1329715	0.94[CHB][hapmap];0.94[CHD][hapmap]
rs1402599	0.94[CHB][hapmap];0.97[CHD][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs16869119	1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs16872574	0.85[ASN][1000 genomes]
rs17422760	0.81[CHD][hapmap]
rs1935549	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2139863	1.00[CHB][hapmap];0.88[JPT][hapmap];0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs227830	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs227832	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs227833	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs227835	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs227836	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs227839	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs227840	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs227844	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs227845	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs227849	0.83[JPT][hapmap]
rs227852	1.00[CHB][hapmap];0.84[CHD][hapmap];0.88[JPT][hapmap];0.91[MEX][hapmap];0.84[TSI][hapmap];0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs227853	1.00[CHB][hapmap];0.84[CHD][hapmap];0.88[JPT][hapmap];0.95[MEX][hapmap];0.84[TSI][hapmap];0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs227857	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2894599	0.85[ASN][1000 genomes]
rs34243039	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs34577161	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34776198	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs34817919	0.85[ASN][1000 genomes]
rs35376827	0.85[ASN][1000 genomes]
rs35856781	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs3778507	0.84[CHD][hapmap]
rs3799965	1.00[ASW][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.88[JPT][hapmap];0.90[MEX][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs3799966	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs3799969	0.86[ASN][1000 genomes]
rs3799970	0.86[ASN][1000 genomes]
rs3799972	1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3799974	1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs3799977	0.84[CHD][hapmap]
rs3799979	0.84[CHD][hapmap]
rs3799986	0.84[CHD][hapmap]
rs3823252	1.00[CHB][hapmap];0.94[CHD][hapmap];0.91[GIH][hapmap];0.88[JPT][hapmap];0.90[MEX][hapmap];0.84[TSI][hapmap];0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs3997503	0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4711797	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4714812	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4714825	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4714827	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4714828	0.84[CHD][hapmap]
rs524492	0.94[CHB][hapmap];0.97[CHD][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs542444	1.00[CHB][hapmap];0.97[CHD][hapmap];0.88[JPT][hapmap];0.86[MEX][hapmap];0.86[ASN][1000 genomes]
rs562016	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs608941	0.84[CHD][hapmap]
rs609643	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs609699	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs66642874	0.85[ASN][1000 genomes]
rs67597621	0.83[ASN][1000 genomes]
rs6919161	0.94[CHB][hapmap]
rs720988	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs720989	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs72664272	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72664273	0.84[ASN][1000 genomes]
rs72664274	0.85[ASN][1000 genomes]
rs7746032	0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7754378	0.84[CHD][hapmap]
rs7769218	1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9369516	0.84[CHD][hapmap]
rs9395051	0.84[CHD][hapmap]
rs9463017	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9463039	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9463040	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9472331	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9472335	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9472376	0.80[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.87[JPT][hapmap];0.85[ASN][1000 genomes]

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs1418435	SUPT3H	cis	cerebellum	SCAN
rs1418435	SUPT3H	cis	multi-tissue	Pritchard
rs1418435	SUPT3H	cis	lymphoblastoid	seeQTL
rs1418435	SUPT3H	cis	parietal	SCAN
rs1418435	UNC5CL	cis	cerebellum	SCAN
rs1418435	SPATS1	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44710000-44711400	Enhancers	Fetal Intestine Large	intestine
2	chr6:44710000-44711600	Enhancers	Fetal Intestine Small	intestine
3	chr6:44710000-44712400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr6:44710400-44711200	Enhancers	Duodenum Mucosa	Duodenum
5	chr6:44710600-44711000	Enhancers	HepG2	liver

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