Variant report

Variant	rs12527668
Chromosome Location	chr6:45008924-45008925
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:45008781..45011238-chr6:45015698..45018079,2	MCF-7	breast:
2	chr6:45003285..45005012-chr6:45007518..45010080,2	K562	blood:

Extended variants
information (count: 132 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:115)

rs_ID	r²[population]
rs1023089	0.85[ASN][1000 genomes]
rs1023090	0.84[ASN][1000 genomes]
rs1023091	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1028944	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1041332	0.85[ASN][1000 genomes]
rs10948198	0.85[ASN][1000 genomes]
rs12190261	0.84[ASN][1000 genomes]
rs12205071	0.83[ASN][1000 genomes]
rs12208023	0.83[ASN][1000 genomes]
rs12525773	0.80[ASN][1000 genomes]
rs12526649	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12526755	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12527743	0.81[AMR][1000 genomes]
rs12527908	0.88[EUR][1000 genomes]
rs12528232	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12528762	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12529522	0.88[EUR][1000 genomes]
rs12529990	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12530207	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12661902	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12662272	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12663530	0.83[EUR][1000 genomes]
rs12663798	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1284955	0.81[ASN][1000 genomes]
rs1284962	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1284964	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1284967	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1284979	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1284989	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1284993	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1284995	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1284999	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1285000	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1285003	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1285005	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1285006	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1285007	0.81[AMR][1000 genomes]
rs1285008	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1285009	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1285010	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1285011	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1285020	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1285021	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1285025	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1285028	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1285029	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1285030	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13198471	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13201942	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13205113	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13207575	0.83[ASN][1000 genomes]
rs13209827	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13211006	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13216967	0.85[EUR][1000 genomes]
rs1324535	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1329715	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1360195	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16873257	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1748233	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1748236	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1748240	0.81[AMR][1000 genomes]
rs1797148	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1797149	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1797156	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1853652	0.81[AMR][1000 genomes]
rs2186062	0.82[ASN][1000 genomes]
rs2396381	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2396426	0.82[AMR][1000 genomes]
rs2815263	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs34152708	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34251367	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34286542	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35103634	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35134594	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35687006	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35704584	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35811020	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35817842	0.83[ASN][1000 genomes]
rs35908738	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs36105034	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3799987	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4412189	0.82[ASN][1000 genomes]
rs4475320	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4512220	0.88[EUR][1000 genomes]
rs4711809	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4714829	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4714834	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4714836	0.83[ASN][1000 genomes]
rs4714838	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4714842	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs59945128	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6458418	0.84[ASN][1000 genomes]
rs67911131	0.87[EUR][1000 genomes]
rs6904584	0.85[EUR][1000 genomes]
rs6917594	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6919161	0.88[EUR][1000 genomes]
rs6933553	0.82[ASN][1000 genomes]
rs6936475	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73449282	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7745506	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7758031	0.83[ASN][1000 genomes]
rs7763450	0.81[ASN][1000 genomes]
rs7763973	0.83[ASN][1000 genomes]
rs9296450	0.80[ASN][1000 genomes]
rs9349309	0.82[ASN][1000 genomes]
rs9367214	0.82[ASN][1000 genomes]
rs9369530	0.82[ASN][1000 genomes]
rs9369549	0.82[AMR][1000 genomes]
rs9381361	0.85[ASN][1000 genomes]
rs9463069	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9463070	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9472414	0.80[ASN][1000 genomes]
rs9472442	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs969211	0.83[ASN][1000 genomes]
rs9885796	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885861	chr6:44837356-45043618	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	nsv1024370	chr6:44878053-45251451	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	esv2758051	chr6:44879791-45056758	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv2759423	chr6:44879791-45056758	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv885862	chr6:44890760-45083966	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv885863	chr6:44890760-45083966	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv885864	chr6:44890760-45198796	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
10	nsv1023018	chr6:44925393-45152912	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv538212	chr6:44925393-45152912	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv603008	chr6:44958372-45081821	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	esv2762589	chr6:44982992-45044580	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv1018962	chr6:44996714-45038038	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv1024404	chr6:44996714-45039419	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	nsv1026728	chr6:45001948-45126730	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
17	nsv538213	chr6:45001948-45126730	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45007800-45009200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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