Variant report

Variant	rs9369551
Chromosome Location	chr6:45223784-45223785
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1080415	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10807319	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10807320	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12205274	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12208924	0.84[EUR][1000 genomes]
rs12524323	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12529946	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1284961	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1284965	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1284969	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1285013	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1285014	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1285019	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1290386	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1304168	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1324540	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1581777	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1629542	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1748231	0.81[EUR][1000 genomes]
rs1748234	0.82[EUR][1000 genomes]
rs1748235	0.82[EUR][1000 genomes]
rs1748237	0.83[EUR][1000 genomes]
rs1748242	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1797145	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1797147	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2396504	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4072928	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4352679	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4714845	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4714847	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4714848	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6458430	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6901786	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6905396	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6932804	0.81[EUR][1000 genomes]
rs6937317	0.82[ASN][1000 genomes]
rs6938316	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7757282	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7767025	0.86[AMR][1000 genomes]
rs927658	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9296453	0.82[ASN][1000 genomes]
rs9296455	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9296458	0.82[AMR][1000 genomes]
rs9357478	0.80[ASN][1000 genomes]
rs9357480	0.82[ASN][1000 genomes]
rs9369552	0.92[ASN][1000 genomes]
rs9395086	0.82[ASN][1000 genomes]
rs9395088	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9463081	0.82[ASN][1000 genomes]
rs9472451	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs988147	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1024370	chr6:44878053-45251451	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv492309	chr6:45020402-45233484	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1028068	chr6:45169010-45246577	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv2763550	chr6:45186825-45275593	Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv830652	chr6:45187467-45328983	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9369551	SUPT3H	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45218600-45239000	Weak transcription	Dnd41	blood
2	chr6:45222800-45224800	Weak transcription	Fetal Intestine Small	intestine
3	chr6:45223200-45225800	Weak transcription	Liver	Liver

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