Variant report

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10456119	0.80[ASN][1000 genomes]
rs11524119	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12197442	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12200412	0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12207620	0.81[ASN][1000 genomes]
rs1293598	0.83[ASN][1000 genomes]
rs34808716	0.82[ASN][1000 genomes]
rs34982599	0.84[ASN][1000 genomes]
rs3799977	0.80[ASN][1000 genomes]
rs3799979	0.82[ASN][1000 genomes]
rs3957281	0.82[ASN][1000 genomes]
rs4711803	0.80[ASN][1000 genomes]
rs4711805	0.82[ASN][1000 genomes]
rs4714828	0.81[ASN][1000 genomes]
rs472673	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs500773	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs538801	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs567054	0.85[ASN][1000 genomes]
rs588848	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs591129	0.82[AMR][1000 genomes]
rs608941	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62438007	0.82[ASN][1000 genomes]
rs62438011	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6458414	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6923519	0.81[ASN][1000 genomes]
rs718112	0.81[ASN][1000 genomes]
rs7747642	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7754378	0.81[ASN][1000 genomes]
rs9367211	0.80[ASN][1000 genomes]
rs9395055	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885861	chr6:44837356-45043618	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033815	chr6:44845514-44938799	Enhancers Strong transcription Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13201202	SUPT3H	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44854600-44866200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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