Variant report

Variant	rs10484625
Chromosome Location	chr6:44823449-44823450
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:44816641..44819151-chr6:44821596..44823845,2	MCF-7	breast:
2	chr6:44821812..44824546-chr6:44828040..44830649,2	K562	blood:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10456120	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10484626	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10948171	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10948172	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10948176	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10948196	1.00[JPT][hapmap]
rs12190313	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12191977	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12193264	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12194924	0.81[AMR][1000 genomes]
rs12196188	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes]
rs12198016	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12198308	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12200892	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12202609	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12202698	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12202704	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12208332	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12208605	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes]
rs12209944	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12210292	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12211922	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12212190	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12214435	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12214794	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12215095	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12215263	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12215971	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1329709	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes]
rs1329711	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes]
rs17423748	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3997499	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4644056	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs529125	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55864280	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62436368	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62436369	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62436374	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62436375	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62436376	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62436395	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62436396	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62436411	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62437973	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62438018	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6909047	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6924185	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs72865924	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7349931	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs755	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs756	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7765371	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs857601	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs860741	0.95[CEU][hapmap]
rs9367210	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9463042	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9463043	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9472365	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9472367	0.82[EUR][1000 genomes]

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44818000-44832200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr6:44818400-44825800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr6:44818400-44826400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr6:44818800-44823600	Weak transcription	HSMM	muscle
5	chr6:44820000-44824600	Enhancers	Fetal Intestine Large	intestine
6	chr6:44820400-44832200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr6:44821600-44824800	Enhancers	Primary T cells from cord blood	blood
8	chr6:44821600-44824800	Enhancers	Fetal Intestine Small	intestine
9	chr6:44822000-44824400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr6:44822200-44824400	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr6:44822400-44824600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr6:44822600-44824000	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr6:44822600-44824600	Enhancers	Fetal Heart	heart
14	chr6:44822600-44828400	Enhancers	Fetal Lung	lung
15	chr6:44822800-44824600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr6:44822800-44824600	Enhancers	Ovary	ovary
17	chr6:44822800-44824800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr6:44822800-44824800	Enhancers	Fetal Kidney	kidney
19	chr6:44823000-44823800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr6:44823000-44824600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr6:44823000-44826200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr6:44823000-44829600	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr6:44823200-44823600	Weak transcription	Brain Germinal Matrix	brain
24	chr6:44823200-44823600	Enhancers	Osteobl	bone
25	chr6:44823200-44823800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr6:44823200-44824200	Enhancers	Primary T helper naive cells from peripheral blood	blood
27	chr6:44823200-44824200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr6:44823200-44824400	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr6:44823200-44824600	Enhancers	Fetal Brain Male	brain
30	chr6:44823200-44828800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr6:44823400-44823600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr6:44823400-44823600	Enhancers	HSMMtube	muscle
33	chr6:44823400-44823800	Enhancers	Muscle Satellite Cultured Cells	--
34	chr6:44823400-44824200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr6:44823400-44824400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr6:44823400-44824400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr6:44823400-44824400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
38	chr6:44823400-44824600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr6:44823400-44824600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr6:44823400-44824600	Enhancers	Fetal Stomach	stomach
41	chr6:44823400-44824600	Enhancers	NHDF-Ad	bronchial
42	chr6:44823400-44824800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr6:44823400-44826600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links