Variant report

Variant	rs62436374
Chromosome Location	chr6:44874785-44874786
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:44874731..44877061-chr6:44885216..44887016,2	K562	blood:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10456120	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10484625	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10484626	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10948171	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10948172	0.88[EUR][1000 genomes]
rs10948176	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11967224	0.85[EUR][1000 genomes]
rs12190313	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12191977	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12193264	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12194924	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12196188	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12198016	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12198308	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12200892	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12202609	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12202698	0.89[EUR][1000 genomes]
rs12202704	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12208332	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12208605	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12209944	0.89[EUR][1000 genomes]
rs12211922	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12212190	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12214435	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12214794	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12215095	0.85[EUR][1000 genomes]
rs12215263	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12215971	0.89[EUR][1000 genomes]
rs1329709	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1329711	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17423748	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3997499	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4644056	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs529125	0.89[EUR][1000 genomes]
rs55864280	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62436368	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62436369	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62436375	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62436376	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62436395	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62436396	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62436411	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62436436	0.84[EUR][1000 genomes]
rs62437973	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62438018	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6908606	0.81[EUR][1000 genomes]
rs6909047	0.81[EUR][1000 genomes]
rs72865924	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7349931	0.89[EUR][1000 genomes]
rs755	0.89[EUR][1000 genomes]
rs756	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7765371	0.88[EUR][1000 genomes]
rs857601	0.89[EUR][1000 genomes]
rs9367210	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9463042	0.88[EUR][1000 genomes]
rs9463043	0.88[EUR][1000 genomes]
rs9472365	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885861	chr6:44837356-45043618	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033815	chr6:44845514-44938799	Enhancers Strong transcription Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv5286	chr6:44865290-44909915	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44859200-44889400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr6:44862600-44889400	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr6:44864800-44888400	Weak transcription	Primary T cells from cord blood	blood
4	chr6:44866600-44879600	Weak transcription	Pancreas	Pancrea
5	chr6:44873200-44888000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr6:44874400-44874800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr6:44874600-44874800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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