Variant report

Variant	rs12208523
Chromosome Location	chr6:45058828-45058829
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs10456120	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10456121	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10456122	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10456542	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10456543	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10456549	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10484626	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10948196	1.00[JPT][hapmap]
rs10948201	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10948204	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10948205	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10948211	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10948212	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10948213	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10948214	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10948216	0.80[AMR][1000 genomes]
rs10948220	1.00[JPT][hapmap]
rs11961316	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11964690	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11965706	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11967630	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11970412	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12190313	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12190367	0.80[AMR][1000 genomes]
rs12191262	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12191521	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12191566	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12192890	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12193030	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12193682	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12193720	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12193812	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12196188	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12198308	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12198376	1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12198982	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12201005	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12205860	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12206561	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12206568	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12208332	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12208605	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12209161	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12210292	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12211519	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12212190	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12212745	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12213735	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1324536	1.00[CHB][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1329709	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1329711	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17209636	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17209678	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17288250	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17288257	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17423748	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2038765	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2093900	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs34455867	0.88[ASN][1000 genomes]
rs3997499	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4267941	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4400216	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4443508	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4479922	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs56283067	1.00[ASN][1000 genomes]
rs56337964	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs62436760	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62436778	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62436779	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62436780	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs62436781	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62436782	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs62438863	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62438864	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62438867	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62438877	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6908606	0.82[ASN][1000 genomes]
rs6909047	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs6919813	0.81[AMR][1000 genomes]
rs6919873	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6919998	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6920046	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6924185	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs6927213	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs72869118	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72869127	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72870950	0.82[AMR][1000 genomes]
rs9367210	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1024370	chr6:44878053-45251451	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv885862	chr6:44890760-45083966	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv885863	chr6:44890760-45083966	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv885864	chr6:44890760-45198796	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1023018	chr6:44925393-45152912	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv538212	chr6:44925393-45152912	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv603008	chr6:44958372-45081821	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv1026728	chr6:45001948-45126730	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv538213	chr6:45001948-45126730	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv885865	chr6:45012223-45102025	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	nsv492309	chr6:45020402-45233484	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
14	nsv528130	chr6:45056086-45083966	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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