Variant report

Variant	rs1028925
Chromosome Location	chr10:19175765-19175766
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10826577	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1329221	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1329222	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1556113	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1844545	0.89[EUR][1000 genomes]
rs1952474	0.89[EUR][1000 genomes]
rs2104699	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4443968	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4465267	0.92[ASN][1000 genomes]
rs4607963	0.92[ASN][1000 genomes]
rs6481522	0.86[EUR][1000 genomes]
rs6481555	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6481556	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7071565	0.90[EUR][1000 genomes]
rs7071978	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7082839	0.91[ASN][1000 genomes]
rs7086992	0.89[ASN][1000 genomes]
rs7908741	0.89[ASN][1000 genomes]
rs7911338	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7916006	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7917968	0.95[ASN][1000 genomes]
rs7921382	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894915	chr10:18984571-19257664	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv550123	chr10:19090812-19228730	Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv894916	chr10:19095467-19429415	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv5999	chr10:19163832-19199133	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:19174600-19175800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr10:19174800-19175800	Enhancers	Duodenum Mucosa	Duodenum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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