Variant report

Variant	rs6481522
Chromosome Location	chr10:19093543-19093544
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1028925	0.86[EUR][1000 genomes]
rs11007446	0.91[ASN][1000 genomes]
rs12763998	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1844545	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1952474	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7071565	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7911338	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894915	chr10:18984571-19257664	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv997980	chr10:19088017-19099867	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv550123	chr10:19090812-19228730	Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:19093200-19093600	Enhancers	Brain Hippocampus Middle	brain
2	chr10:19093200-19094000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:19093200-19094000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr10:19093400-19094000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr10:19093400-19094200	Enhancers	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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