Variant report
| Variant | rs1029083 |
|---|---|
| Chromosome Location | chr1:158628014-158628015 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
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| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs2022002 | 0.85[EUR][1000 genomes] |
| rs2157691 | 0.84[EUR][1000 genomes] |
| rs2246434 | 0.96[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2251963 | 0.84[EUR][1000 genomes] |
| rs2251964 | 0.84[EUR][1000 genomes] |
| rs2479868 | 0.84[EUR][1000 genomes] |
| rs2482963 | 0.84[EUR][1000 genomes] |
| rs2518489 | 0.84[EUR][1000 genomes] |
| rs2518490 | 0.84[EUR][1000 genomes] |
| rs2518491 | 0.85[EUR][1000 genomes] |
| rs2518493 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2779116 | 0.85[EUR][1000 genomes] |
| rs2852634 | 0.85[EUR][1000 genomes] |
| rs2852635 | 0.85[EUR][1000 genomes] |
| rs2852637 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs857684 | 0.87[EUR][1000 genomes] |
| rs857685 | 0.87[EUR][1000 genomes] |
| rs857689 | 0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs857691 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs857720 | 0.82[EUR][1000 genomes] |
| rs857721 | 0.83[EUR][1000 genomes] |
| rs857725 | 0.83[EUR][1000 genomes] |
| rs860772 | 0.87[EUR][1000 genomes] |
| rs861409 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs863327 | 0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3491788 | chr1:158537183-158725907 | Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 2 | esv3491789 | chr1:158537242-158725858 | Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 3 | nsv872481 | chr1:158625789-158712510 | Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Active TSS | TF binding regionCpG islandChromatin interactive region | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:158612200-158628800 | Strong transcription | K562 | blood |
