Variant report

Variant	rs860772
Chromosome Location	chr1:158576100-158576101
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:158573956..158576878-chr1:158587487..158590074,2	K562	blood:

Variant related genes	Relation type
ENSG00000163554	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1029083	0.87[EUR][1000 genomes]
rs16840314	0.86[CEU][hapmap];0.84[TSI][hapmap]
rs2022002	0.83[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2022003	0.95[CEU][hapmap];0.87[CHB][hapmap];0.84[JPT][hapmap];0.84[EUR][1000 genomes]
rs2157691	1.00[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2246434	0.86[CEU][hapmap];0.91[GIH][hapmap];0.88[EUR][1000 genomes]
rs2251963	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2251964	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2479861	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs2479862	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2479868	1.00[CEU][hapmap];0.87[CHB][hapmap];0.81[GIH][hapmap];0.84[JPT][hapmap];0.82[TSI][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2482963	0.94[EUR][1000 genomes]
rs2518489	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2518490	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2518491	0.82[ASW][hapmap];1.00[CEU][hapmap];0.87[CHB][hapmap];0.81[GIH][hapmap];0.84[JPT][hapmap];0.82[TSI][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2518493	0.81[CEU][hapmap];0.87[EUR][1000 genomes]
rs2779116	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2852634	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2852635	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2852637	0.87[EUR][1000 genomes]
rs857683	0.99[ASN][1000 genomes]
rs857684	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs857685	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs857686	0.99[ASN][1000 genomes]
rs857688	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs857689	0.86[EUR][1000 genomes]
rs857691	0.84[EUR][1000 genomes]
rs857708	0.98[ASN][1000 genomes]
rs857719	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs857720	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs857721	1.00[CEU][hapmap];0.83[CHB][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs857725	1.00[CEU][hapmap];0.87[CHB][hapmap];0.81[GIH][hapmap];0.82[TSI][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs861409	0.81[CEU][hapmap];0.86[EUR][1000 genomes]
rs863327	0.81[CEU][hapmap];0.86[EUR][1000 genomes]
rs863343	0.85[CEU][hapmap]
rs863344	0.86[CEU][hapmap];0.84[TSI][hapmap]
rs863366	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs863368	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs950488	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3491788	chr1:158537183-158725907	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv3491789	chr1:158537242-158725858	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:158574000-158576800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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