Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr1:158534365-158534853	HL-60	blood:	n/a	chr1:158534606-158534619 chr1:158534605-158534618 chr1:158534608-158534617 chr1:158534609-158534616
2	SPI1	chr1:158534281-158534841	HL-60	blood:	n/a	chr1:158534606-158534619 chr1:158534605-158534618 chr1:158534608-158534617 chr1:158534609-158534616

Variant related genes	Relation type
OR6P1	TF binding region

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10489832	0.81[ASN][1000 genomes]
rs11264980	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11264982	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11265005	0.90[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs12044799	0.89[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs16840314	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs2022003	0.82[CEU][hapmap]
rs2157691	0.86[CEU][hapmap]
rs2246434	0.81[CEU][hapmap]
rs2479868	0.86[CEU][hapmap]
rs2518491	0.86[CEU][hapmap]
rs2852635	0.94[AFR][1000 genomes]
rs857684	0.86[CEU][hapmap];0.84[TSI][hapmap]
rs857685	0.86[CEU][hapmap]
rs857720	0.89[AFR][1000 genomes]
rs857721	0.86[CEU][hapmap]
rs857725	0.86[CEU][hapmap]
rs860772	0.86[CEU][hapmap];0.84[TSI][hapmap]
rs863327	1.00[ASW][hapmap]
rs863343	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs879636	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs950488	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];0.94[JPT][hapmap];0.83[MKK][hapmap];0.84[TSI][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013656	chr1:158516984-158542929	Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1015106	chr1:158516984-158545423	Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv547986	chr1:158520205-158556839	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs863344	OR6Y1	cis	cerebellum	SCAN
rs863344	CHRNB2	cis	cerebellum	SCAN
rs863344	SLC27A3	cis	cerebellum	SCAN
rs863344	EFNA3	cis	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:158533600-158535000	Enhancers	Primary B cells from peripheral blood	blood
2	chr1:158533600-158535200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr1:158534200-158535000	Enhancers	Primary hematopoietic stem cells	blood
4	chr1:158534200-158535000	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr1:158534600-158535000	Enhancers	Primary B cells from cord blood	blood
6	chr1:158534800-158535000	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr1:158534800-158535000	Enhancers	Monocytes-CD14+_RO01746	blood

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