Variant report

Variant	rs1029312
Chromosome Location	chr6:36210174-36210175
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:36197473..36201829-chr6:36205316..36210325,5	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs4711445	0.81[ASN][1000 genomes]
rs4713939	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9348993	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36185800-36210600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:36198400-36211400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:36199000-36210800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr6:36199400-36211000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr6:36199800-36211400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr6:36199800-36216200	Weak transcription	NHLF	lung
7	chr6:36200200-36210600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:36200200-36211400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr6:36200200-36213000	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr6:36201200-36211400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:36201200-36212200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:36201200-36212800	Weak transcription	Fetal Lung	lung
13	chr6:36201200-36215400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr6:36201400-36211400	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr6:36201400-36215600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:36201400-36216600	Weak transcription	Aorta	Aorta
17	chr6:36201600-36213400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr6:36201600-36213400	Weak transcription	Liver	Liver
19	chr6:36201600-36214800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr6:36201600-36214800	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr6:36201800-36211000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr6:36201800-36211000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr6:36201800-36211600	Weak transcription	HUVEC	blood vessel
24	chr6:36201800-36212600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr6:36201800-36215400	Weak transcription	Colon Smooth Muscle	Colon
26	chr6:36202000-36211200	Weak transcription	Fetal Thymus	thymus
27	chr6:36202000-36212400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr6:36202000-36212600	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr6:36202400-36212600	Weak transcription	Fetal Muscle Trunk	muscle
30	chr6:36202400-36213400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr6:36202800-36210600	Weak transcription	Brain Hippocampus Middle	brain
32	chr6:36203600-36213200	Weak transcription	Duodenum Mucosa	Duodenum
33	chr6:36203800-36213200	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr6:36203800-36215400	Weak transcription	Stomach Smooth Muscle	stomach
35	chr6:36203800-36220200	Weak transcription	Right Atrium	heart
36	chr6:36204000-36213200	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr6:36204000-36213400	Weak transcription	Colonic Mucosa	Colon
38	chr6:36204400-36215200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr6:36204600-36215800	Weak transcription	Fetal Brain Female	brain
40	chr6:36204800-36212600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr6:36208200-36211000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr6:36208200-36213400	Weak transcription	Gastric	stomach
43	chr6:36208200-36213400	Weak transcription	Pancreas	Pancrea
44	chr6:36208200-36214600	Weak transcription	Esophagus	oesophagus
45	chr6:36208400-36210800	Enhancers	Primary monocytes fromperipheralblood	blood
46	chr6:36209000-36210200	Enhancers	Primary B cells from peripheral blood	blood
47	chr6:36209000-36210400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr6:36209000-36211800	Enhancers	Fetal Intestine Large	intestine
49	chr6:36209200-36210200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
50	chr6:36209200-36210400	Enhancers	Primary B cells from cord blood	blood

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