Variant report

Variant	rs4711445
Chromosome Location	chr6:36205532-36205533
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36097844..36100311-chr6:36203870..36206586,2	K562	blood:
2	chr6:36197473..36201829-chr6:36205316..36210325,5	MCF-7	breast:
3	chr6:36204203..36205882-chr6:36212331..36215072,2	K562	blood:
4	chr6:36204276..36206815-chr6:36209360..36211589,2	K562	blood:

Variant related genes	Relation type
ENSG00000156711	Chromatin interaction
ENSG00000180316	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1029312	0.81[ASN][1000 genomes]
rs16886912	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4711446	0.85[AMR][1000 genomes]
rs4713939	0.95[CHB][hapmap];0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs72657688	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7759056	0.91[CHB][hapmap]
rs9380560	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36185800-36210600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:36193800-36206800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr6:36194600-36207200	Weak transcription	Fetal Heart	heart
4	chr6:36196000-36209200	Weak transcription	K562	blood
5	chr6:36198400-36209200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr6:36198400-36211400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr6:36198800-36209600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr6:36199000-36210800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr6:36199400-36207400	Weak transcription	Brain Substantia Nigra	brain
10	chr6:36199400-36211000	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr6:36199600-36205800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr6:36199600-36209200	Weak transcription	GM12878-XiMat	blood
13	chr6:36199800-36211400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr6:36199800-36216200	Weak transcription	NHLF	lung
15	chr6:36200200-36208000	Weak transcription	Esophagus	oesophagus
16	chr6:36200200-36209600	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr6:36200200-36210600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr6:36200200-36211400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr6:36200200-36213000	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr6:36200400-36207400	Weak transcription	HepG2	liver
21	chr6:36201200-36209200	Weak transcription	Right Ventricle	heart
22	chr6:36201200-36211400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr6:36201200-36212200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:36201200-36212800	Weak transcription	Fetal Lung	lung
25	chr6:36201200-36215400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr6:36201400-36207000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr6:36201400-36209000	Weak transcription	Primary B cells from peripheral blood	blood
28	chr6:36201400-36209200	Weak transcription	Left Ventricle	heart
29	chr6:36201400-36211400	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr6:36201400-36215600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr6:36201400-36216600	Weak transcription	Aorta	Aorta
32	chr6:36201600-36209000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr6:36201600-36209600	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr6:36201600-36209600	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr6:36201600-36213400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr6:36201600-36213400	Weak transcription	Liver	Liver
37	chr6:36201600-36214800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr6:36201600-36214800	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr6:36201800-36206600	Weak transcription	HSMMtube	muscle
40	chr6:36201800-36207000	Weak transcription	Rectal Smooth Muscle	rectum
41	chr6:36201800-36207800	Weak transcription	Gastric	stomach
42	chr6:36201800-36209000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr6:36201800-36209200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr6:36201800-36209200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr6:36201800-36209200	Weak transcription	Ovary	ovary
46	chr6:36201800-36209800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr6:36201800-36211000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr6:36201800-36211000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr6:36201800-36211600	Weak transcription	HUVEC	blood vessel
50	chr6:36201800-36212600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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