Variant report

Variant	rs9380560
Chromosome Location	chr6:36217278-36217279
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs16886912	0.88[AMR][1000 genomes]
rs4711445	0.89[AMR][1000 genomes]
rs4711446	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72657688	0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36203800-36220200	Weak transcription	Right Atrium	heart
2	chr6:36209200-36218200	Enhancers	Fetal Intestine Small	intestine
3	chr6:36211200-36218200	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr6:36212200-36218200	Enhancers	Fetal Intestine Large	intestine
5	chr6:36214600-36217600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:36214600-36217800	Enhancers	HUVEC	blood vessel
7	chr6:36215000-36218200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:36215200-36218000	Enhancers	Muscle Satellite Cultured Cells	--
9	chr6:36215200-36218000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:36215200-36218200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:36215400-36217400	Enhancers	NHEK	skin
12	chr6:36215600-36220200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:36215800-36217600	Enhancers	NHDF-Ad	bronchial
14	chr6:36216000-36220000	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr6:36216200-36217600	Enhancers	NHLF	lung
16	chr6:36216800-36217800	Enhancers	Primary neutrophils fromperipheralblood	blood
17	chr6:36217000-36218200	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr6:36217200-36217400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr6:36217200-36217400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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