Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10230410	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10245130	0.81[CEU][hapmap]
rs10245751	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10267392	0.84[EUR][1000 genomes]
rs1029819	0.91[CHB][hapmap]
rs1029820	0.90[CHB][hapmap]
rs10953539	0.81[CEU][hapmap]
rs12705410	0.91[CEU][hapmap]
rs12705419	0.81[CEU][hapmap];0.80[CHB][hapmap]
rs2068338	0.81[CEU][hapmap];0.90[CHB][hapmap]
rs2068339	0.91[CHB][hapmap]
rs2191323	0.95[CEU][hapmap];0.83[EUR][1000 genomes]
rs2215377	0.81[CEU][hapmap]
rs2361379	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2361380	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2885267	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6466171	0.91[CHB][hapmap]
rs6947554	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6977674	0.81[CEU][hapmap]
rs728470	0.95[CEU][hapmap];0.85[EUR][1000 genomes]
rs7791883	1.00[YRI][hapmap]
rs7807057	0.91[CHB][hapmap]
rs7808132	0.91[CHB][hapmap]
rs953944	0.91[CHB][hapmap]
rs9641383	0.91[CHB][hapmap];1.00[YRI][hapmap]
rs996543	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs996893	0.81[CEU][hapmap];0.90[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv607654	chr7:77537964-78014329	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78008800-78009800	Enhancers	HSMM	muscle
2	chr7:78009000-78012400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr7:78009200-78012000	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr7:78009200-78012200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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