Variant report

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10229989	0.93[AFR][1000 genomes]
rs10230410	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10244093	0.91[AFR][1000 genomes]
rs10245130	0.93[AFR][1000 genomes]
rs10245751	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10259279	0.93[AFR][1000 genomes]
rs10267392	0.82[EUR][1000 genomes]
rs1029819	0.83[AFR][1000 genomes]
rs1029820	0.86[AFR][1000 genomes]
rs1029821	0.86[AFR][1000 genomes]
rs1029822	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1029823	0.86[AFR][1000 genomes]
rs1029824	0.86[AFR][1000 genomes]
rs10953539	0.93[AFR][1000 genomes]
rs1156665	0.95[AFR][1000 genomes]
rs11764199	0.95[AFR][1000 genomes]
rs1988400	0.88[AFR][1000 genomes]
rs2068338	0.84[AFR][1000 genomes]
rs2068339	0.84[AFR][1000 genomes]
rs2191323	0.81[EUR][1000 genomes]
rs2191325	0.93[AFR][1000 genomes]
rs2361379	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2361380	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2885267	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs728470	0.83[EUR][1000 genomes]
rs7790832	0.84[AFR][1000 genomes]
rs7808132	0.84[AFR][1000 genomes]
rs953944	0.81[AFR][1000 genomes]
rs995753	0.83[AFR][1000 genomes]
rs996543	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv607654	chr7:77537964-78014329	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78000800-78001600	Weak transcription	Brain Germinal Matrix	brain
2	chr7:78001000-78001600	Enhancers	Fetal Brain Male	brain
3	chr7:78001000-78003200	Weak transcription	Fetal Brain Female	brain
4	chr7:78001200-78001400	Enhancers	Cortex derived primary cultured neurospheres	brain

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