Variant report

Variant	rs1030261
Chromosome Location	chr16:75485303-75485304
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:75482535..75486737-chr16:75496881..75499746,4	MCF-7	breast:
2	chr16:75479224..75481746-chr16:75483426..75485775,2	MCF-7	breast:
3	chr16:75482835..75485909-chr16:75488077..75491215,3	MCF-7	breast:
4	chr16:75484834..75486410-chr20:45987978..45990446,2	MCF-7	breast:
5	chr16:75480575..75485333-chr16:75494576..75499874,6	K562	blood:
6	chr16:75467998..75470976-chr16:75484514..75486577,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000261717	Chromatin interaction
ENSG00000166822	Chromatin interaction

Extended variants
information (count: 270 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:262)

rs_ID	r²[population]
rs100912	0.83[ASN][1000 genomes]
rs1030262	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10431974	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10459859	0.81[EUR][1000 genomes]
rs10514396	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10871311	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10871312	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10871313	0.95[ASN][1000 genomes]
rs1109341	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1109342	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11149815	0.81[EUR][1000 genomes]
rs11149818	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11149820	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11149822	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11149824	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11149825	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11149826	0.82[EUR][1000 genomes]
rs11149827	0.82[EUR][1000 genomes]
rs11149828	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11149829	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11149830	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11149831	0.83[ASN][1000 genomes]
rs11149832	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11149833	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11639783	0.81[ASN][1000 genomes]
rs11640674	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11641249	0.92[ASN][1000 genomes]
rs11641430	0.97[ASN][1000 genomes]
rs11641587	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11641801	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11642572	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11642921	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11643207	0.97[ASN][1000 genomes]
rs11643410	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11644306	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11644592	0.81[ASN][1000 genomes]
rs11644639	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11644741	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11645329	0.82[EUR][1000 genomes]
rs11646677	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11646852	0.81[EUR][1000 genomes]
rs11648176	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11649638	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11858992	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11860231	0.85[EUR][1000 genomes]
rs11860284	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11861810	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11862095	0.81[EUR][1000 genomes]
rs11862582	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11862684	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11864102	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11864587	0.86[EUR][1000 genomes]
rs11865004	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11865296	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12051111	0.93[EUR][1000 genomes]
rs12051136	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12051137	0.92[ASN][1000 genomes]
rs12051326	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12149063	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12443834	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12443904	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12444589	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12445726	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12446877	0.94[ASN][1000 genomes]
rs12448829	0.84[ASN][1000 genomes]
rs12448947	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12449170	0.91[EUR][1000 genomes]
rs12599361	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12917651	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12918797	0.97[ASN][1000 genomes]
rs12924333	0.90[ASN][1000 genomes]
rs12924782	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12924920	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12927562	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12928036	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12928722	0.84[EUR][1000 genomes]
rs12928898	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12929673	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12929908	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12930452	0.91[EUR][1000 genomes]
rs12930768	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12932606	0.81[ASN][1000 genomes]
rs12933281	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12935787	0.81[EUR][1000 genomes]
rs1364077	0.85[EUR][1000 genomes]
rs1364078	0.81[EUR][1000 genomes]
rs1364079	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1424013	0.97[ASN][1000 genomes]
rs1540	0.81[ASN][1000 genomes]
rs1542864	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1544810	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1549306	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17696696	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17696749	0.81[EUR][1000 genomes]
rs17696831	0.97[ASN][1000 genomes]
rs1808434	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1808435	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1808436	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1834013	0.97[ASN][1000 genomes]
rs1834014	0.97[ASN][1000 genomes]
rs1895490	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2059256	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2113232	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2161684	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2242405	0.81[ASN][1000 genomes]
rs2285222	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2285223	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2285224	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2285225	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs247450	0.81[ASN][1000 genomes]
rs247454	0.85[ASN][1000 genomes]
rs2738809	0.85[ASN][1000 genomes]
rs2738814	0.80[ASN][1000 genomes]
rs28558946	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2865528	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2865530	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2865531	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28655617	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2903033	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3115960	0.87[ASN][1000 genomes]
rs34021527	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34222958	0.85[EUR][1000 genomes]
rs34296964	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34539062	0.97[ASN][1000 genomes]
rs34624768	0.81[EUR][1000 genomes]
rs34841467	0.87[EUR][1000 genomes]
rs34918083	0.97[ASN][1000 genomes]
rs34996006	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35209155	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35214308	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35261357	0.85[EUR][1000 genomes]
rs35263058	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35415181	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35552529	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35683383	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35737321	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35787595	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3743609	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs37592	0.97[ASN][1000 genomes]
rs37593	0.97[ASN][1000 genomes]
rs37594	0.97[ASN][1000 genomes]
rs37595	0.97[ASN][1000 genomes]
rs37597	0.89[ASN][1000 genomes]
rs37606	0.92[ASN][1000 genomes]
rs3784935	0.82[EUR][1000 genomes]
rs3851737	0.83[EUR][1000 genomes]
rs3863442	0.83[EUR][1000 genomes]
rs3863446	0.82[EUR][1000 genomes]
rs3863447	0.80[EUR][1000 genomes]
rs40217	0.80[ASN][1000 genomes]
rs40446	0.97[ASN][1000 genomes]
rs4146809	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4146810	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4638613	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4887820	0.85[EUR][1000 genomes]
rs4887821	0.85[EUR][1000 genomes]
rs4887822	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4887823	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4887824	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4887825	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4887828	0.82[ASN][1000 genomes]
rs4887829	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4888378	0.81[EUR][1000 genomes]
rs4888383	0.85[EUR][1000 genomes]
rs4888385	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4888386	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4888387	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4888388	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4888389	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4888390	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4888391	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4888392	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4888400	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4888403	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4888404	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4888405	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4888406	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4888407	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4888408	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4888409	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4888410	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4888411	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4888412	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4888413	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4888414	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4888415	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4888416	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4888418	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4888420	0.91[EUR][1000 genomes]
rs4888421	0.87[EUR][1000 genomes]
rs4888425	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4888426	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4888427	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4888430	0.97[ASN][1000 genomes]
rs4888431	0.94[ASN][1000 genomes]
rs4888432	0.84[ASN][1000 genomes]
rs4993969	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4993970	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56004344	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56116092	0.90[ASN][1000 genomes]
rs56343285	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59155720	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59347518	0.95[ASN][1000 genomes]
rs59465235	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60730309	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62059845	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62059846	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62060550	0.97[ASN][1000 genomes]
rs62060551	0.97[ASN][1000 genomes]
rs62062564	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62062565	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62062567	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62062568	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62062572	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6564252	0.85[EUR][1000 genomes]
rs6564258	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6564259	0.81[EUR][1000 genomes]
rs6564261	0.97[ASN][1000 genomes]
rs67409275	0.90[EUR][1000 genomes]
rs71394207	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs71394219	0.81[ASN][1000 genomes]
rs7184525	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7185640	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7188231	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7188604	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7191890	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7193828	0.86[ASN][1000 genomes]
rs7194035	0.86[ASN][1000 genomes]
rs7195161	0.97[ASN][1000 genomes]
rs7198873	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7199062	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7199132	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7200053	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7200616	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7202567	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7202596	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7203157	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7204984	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7206541	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7206665	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72787160	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7499872	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs766521	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8046000	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8046416	0.81[ASN][1000 genomes]
rs8048527	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8050059	0.85[EUR][1000 genomes]
rs8050769	0.85[EUR][1000 genomes]
rs8051407	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8054769	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8055490	0.91[ASN][1000 genomes]
rs8055974	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8056080	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8056236	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8057084	0.94[ASN][1000 genomes]
rs8057203	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8057849	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8060955	0.84[EUR][1000 genomes]
rs8063068	0.92[ASN][1000 genomes]
rs977985	0.95[ASN][1000 genomes]
rs977987	0.95[ASN][1000 genomes]
rs9933255	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916502	chr16:74845880-75732365	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	131 gene(s)	inside rSNPs	diseases
2	nsv931939	chr16:75261354-75765025	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
3	nsv1065995	chr16:75373756-75626027	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases
4	nsv1063718	chr16:75395969-75608071	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	64 gene(s)	inside rSNPs	diseases
5	esv2758432	chr16:75419614-75576971	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
6	esv2758657	chr16:75419614-75576971	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
7	nsv521596	chr16:75466696-75486648	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
8	nsv525955	chr16:75473332-75628345	Strong transcription Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs1030261	CFDP1	Cis_1M	lymphoblastoid	RTeQTL
rs1030261	RP11-252K23.2	cis	Esophagus Mucosa	GTEx
rs1030261	RP11-252K23.2	cis	Artery Tibial	GTEx
rs1030261	RP11-252K23.2	cis	Thyroid	GTEx

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:75468400-75489400	Weak transcription	Small Intestine	intestine
2	chr16:75468600-75487800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr16:75468600-75489800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr16:75468800-75485400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr16:75468800-75486400	Weak transcription	Pancreas	Pancrea
6	chr16:75468800-75486400	Weak transcription	Right Atrium	heart
7	chr16:75468800-75486600	Weak transcription	HUVEC	blood vessel
8	chr16:75468800-75489200	Weak transcription	Brain Cingulate Gyrus	brain
9	chr16:75468800-75493800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr16:75468800-75497000	Weak transcription	NHLF	lung
11	chr16:75469400-75486600	Weak transcription	K562	blood
12	chr16:75469400-75491000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr16:75469400-75497000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr16:75469400-75497400	Weak transcription	Psoas Muscle	Psoas
15	chr16:75473600-75496000	Weak transcription	HMEC	breast
16	chr16:75476800-75485800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr16:75477000-75487000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr16:75477400-75494400	Weak transcription	NH-A	brain
19	chr16:75477800-75497000	Weak transcription	NHDF-Ad	bronchial
20	chr16:75478600-75486800	Weak transcription	Ovary	ovary
21	chr16:75478800-75485800	Strong transcription	Primary T helper cells fromperipheralblood	blood
22	chr16:75478800-75485800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr16:75479200-75485800	Strong transcription	Primary T cells fromperipheralblood	blood
24	chr16:75479200-75487200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr16:75479400-75485800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr16:75479400-75485800	Strong transcription	Fetal Intestine Large	intestine
27	chr16:75479400-75493800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr16:75479600-75486800	Weak transcription	Colon Smooth Muscle	Colon
29	chr16:75479800-75486400	Weak transcription	Fetal Heart	heart
30	chr16:75480200-75485400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr16:75480200-75485600	Strong transcription	Monocytes-CD14+_RO01746	blood
32	chr16:75480200-75485800	Strong transcription	Dnd41	blood
33	chr16:75480400-75485800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
34	chr16:75480600-75485600	Strong transcription	Primary T helper cells PMA-I stimulated	--
35	chr16:75480600-75485600	Strong transcription	Rectal Mucosa Donor 29	rectum
36	chr16:75480600-75486000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr16:75480800-75485800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
38	chr16:75481000-75485600	Strong transcription	Duodenum Smooth Muscle	Duodenum
39	chr16:75481000-75485800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr16:75481000-75485800	Strong transcription	HUES6 Cell Line	embryonic stem cell
41	chr16:75481000-75485800	Strong transcription	Primary T cells from cord blood	blood
42	chr16:75481000-75485800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr16:75481000-75485800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr16:75481000-75485800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr16:75481000-75485800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr16:75481000-75485800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr16:75481000-75485800	Strong transcription	Duodenum Mucosa	Duodenum
48	chr16:75481000-75489600	Weak transcription	Colonic Mucosa	Colon
49	chr16:75481200-75485600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
50	chr16:75481200-75485800	Strong transcription	HepG2	liver

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