Variant report

Variant	rs6564259
Chromosome Location	chr16:75447393-75447394
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr16:75447199-75447422	ProgFib	skin:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr16:75447160..75449748-chr16:75496363..75499271,2	MCF-7	breast:
2	chr16:75446773..75449547-chr16:75453151..75454754,2	K562	blood:
3	chr16:75283368..75285669-chr16:75446317..75448607,2	MCF-7	breast:
4	chr16:75446375..75448796-chr16:75449757..75451496,2	K562	blood:

Variant related genes	Relation type
ENSG00000252122	TF binding region
ENSG00000050820	Chromatin interaction
ENSG00000166822	Chromatin interaction
ENSG00000261717	Chromatin interaction

Extended variants
information (count: 252 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:244)

rs_ID	r²[population]
rs1011121	0.83[ASN][1000 genomes]
rs1030261	0.81[EUR][1000 genomes]
rs1030262	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10431974	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10459859	0.89[ASN][1000 genomes]
rs10514393	0.86[ASN][1000 genomes]
rs10514396	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10781976	0.82[ASN][1000 genomes]
rs10871309	0.88[ASN][1000 genomes]
rs10871311	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10871312	0.82[EUR][1000 genomes]
rs1109341	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1109342	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11149815	0.81[ASN][1000 genomes]
rs11149818	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11149820	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11149822	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11149824	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11149825	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11149826	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11149827	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11149828	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11149829	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11149830	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11149831	0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11149832	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11149833	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11640018	0.83[ASN][1000 genomes]
rs11640674	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11641532	0.84[ASN][1000 genomes]
rs11641587	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11641801	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11642572	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11642921	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11643410	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11644592	0.93[ASN][1000 genomes]
rs11644639	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11644741	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11645329	0.85[ASN][1000 genomes]
rs11646044	0.80[ASN][1000 genomes]
rs11646677	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11646852	0.84[ASN][1000 genomes]
rs11648176	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11858992	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11860231	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11860284	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11861810	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11862095	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11862582	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11862684	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11862719	0.91[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs11864102	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11864587	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11865004	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11865296	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12051111	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12051136	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12051326	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12149063	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12443834	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12443904	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12444589	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12445726	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12448947	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12449170	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12599361	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12917651	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12922951	0.88[ASN][1000 genomes]
rs12924782	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12924920	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12927562	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12928722	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12928898	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12929673	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12929908	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12930452	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12930768	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12933281	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12935787	0.83[ASN][1000 genomes]
rs1364077	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1364078	0.92[ASN][1000 genomes]
rs1364079	0.93[ASN][1000 genomes]
rs1542864	0.80[AMR][1000 genomes]
rs1544810	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1549306	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1559339	0.83[ASN][1000 genomes]
rs166013	0.87[ASN][1000 genomes]
rs17685540	0.83[ASN][1000 genomes]
rs17696696	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17696749	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1808434	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1808435	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1808436	0.88[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs1862706	0.83[ASN][1000 genomes]
rs1895490	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2059256	0.93[ASN][1000 genomes]
rs2113232	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2161648	0.81[ASN][1000 genomes]
rs2161684	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2285222	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2285223	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2285224	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2285225	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2865528	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2865530	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2865531	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2903033	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs34021527	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34029337	0.84[ASN][1000 genomes]
rs34222958	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs34296964	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34624768	0.83[ASN][1000 genomes]
rs34673655	0.83[ASN][1000 genomes]
rs34841467	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34996006	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35209155	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35214308	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35261357	0.91[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs35263058	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs35409574	0.86[ASN][1000 genomes]
rs35415181	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs35552529	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs35683383	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs35737321	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35787595	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35937717	0.83[ASN][1000 genomes]
rs35952313	0.85[ASN][1000 genomes]
rs3743607	0.81[ASN][1000 genomes]
rs3743609	0.82[AMR][1000 genomes]
rs3784935	0.85[ASN][1000 genomes]
rs3851733	0.89[ASN][1000 genomes]
rs3851737	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs3851738	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs3851740	0.86[ASN][1000 genomes]
rs3863442	0.89[ASN][1000 genomes]
rs3863445	0.89[ASN][1000 genomes]
rs3863446	0.91[ASN][1000 genomes]
rs3863447	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4146809	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4146810	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4243111	0.83[ASN][1000 genomes]
rs4243112	0.83[ASN][1000 genomes]
rs4558442	0.81[ASN][1000 genomes]
rs4638613	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4887815	0.83[ASN][1000 genomes]
rs4887816	0.83[ASN][1000 genomes]
rs4887818	0.89[ASN][1000 genomes]
rs4887820	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4887821	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4887822	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4887823	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4887824	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4887825	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4888372	0.81[ASN][1000 genomes]
rs4888376	0.83[ASN][1000 genomes]
rs4888378	0.83[ASN][1000 genomes]
rs4888379	0.86[ASN][1000 genomes]
rs4888380	0.85[ASN][1000 genomes]
rs4888383	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4888385	0.93[ASN][1000 genomes]
rs4888386	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4888387	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4888388	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4888389	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4888390	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4888391	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4888392	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4888400	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4888403	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4888404	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4888405	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4888406	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4888407	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4888408	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4888409	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4888410	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4888411	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4888412	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4888413	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4888414	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4888415	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4888416	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4888418	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4888420	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4888421	0.87[AFR][1000 genomes]
rs4888425	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4888426	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4888427	0.80[AMR][1000 genomes]
rs4993969	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4993970	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs56004344	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56343285	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs59155720	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs59867374	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs60730309	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60937209	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs62059808	0.87[ASN][1000 genomes]
rs62059845	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62059846	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62062564	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62062565	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62062567	0.93[ASN][1000 genomes]
rs62062568	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62062572	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6564252	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6564258	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6564260	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67409275	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs71394207	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7184525	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7185640	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7188231	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7188604	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7191890	0.81[ASN][1000 genomes]
rs7194129	0.88[ASN][1000 genomes]
rs7198873	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7199062	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7199132	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7200053	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7200616	0.90[ASN][1000 genomes]
rs7202567	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7202596	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7203157	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7204984	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7206541	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7206665	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs72787160	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7499872	0.95[ASN][1000 genomes]
rs766521	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8046000	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8046109	0.87[ASN][1000 genomes]
rs8048527	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8050059	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs8050769	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs8051407	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8054769	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs8055974	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8056080	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs8056236	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8057203	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs8057535	0.85[ASN][1000 genomes]
rs8057849	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8060955	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9922008	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916502	chr16:74845880-75732365	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	131 gene(s)	inside rSNPs	diseases
2	nsv931939	chr16:75261354-75765025	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
3	nsv1065995	chr16:75373756-75626027	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases
4	esv2422358	chr16:75381762-75456763	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1063718	chr16:75395969-75608071	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	64 gene(s)	inside rSNPs	diseases
6	esv2758432	chr16:75419614-75576971	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
7	esv2758657	chr16:75419614-75576971	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
8	nsv1062023	chr16:75427013-75461626	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs6564259	RP11-252K23.2	cis	lung	GTEx
rs6564259	CFDP1	Cis_1M	lymphoblastoid	RTeQTL
rs6564259	RP11-252K23.2	cis	Artery Tibial	GTEx
rs6564259	RP11-252K23.2	cis	Thyroid	GTEx
rs6564259	RP11-252K23.2	cis	Esophagus Mucosa	GTEx

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:75406000-75453400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr16:75407200-75454200	Weak transcription	Stomach Mucosa	stomach
3	chr16:75415600-75453400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr16:75425400-75454200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr16:75425400-75457200	Weak transcription	Fetal Brain Male	brain
6	chr16:75427200-75449200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr16:75427200-75464400	Weak transcription	Esophagus	oesophagus
8	chr16:75427200-75465400	Weak transcription	Spleen	Spleen
9	chr16:75428200-75453400	Weak transcription	Psoas Muscle	Psoas
10	chr16:75429000-75454400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr16:75429000-75454800	Weak transcription	HMEC	breast
12	chr16:75429200-75453400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr16:75429200-75454800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr16:75429200-75455000	Weak transcription	Gastric	stomach
15	chr16:75432400-75465400	Weak transcription	Pancreas	Pancrea
16	chr16:75432400-75466600	Weak transcription	Aorta	Aorta
17	chr16:75437000-75447600	Strong transcription	Fetal Intestine Small	intestine
18	chr16:75437200-75448400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr16:75437200-75454200	Weak transcription	Fetal Heart	heart
20	chr16:75438400-75448200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr16:75438400-75448600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr16:75438400-75448800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
23	chr16:75438600-75448600	Strong transcription	HUES48 Cell Line	embryonic stem cell
24	chr16:75438600-75448600	Strong transcription	HUES64 Cell Line	embryonic stem cell
25	chr16:75439000-75448600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr16:75439200-75447400	Strong transcription	Fetal Muscle Leg	muscle
27	chr16:75439200-75447400	Strong transcription	Fetal Stomach	stomach
28	chr16:75439600-75447400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr16:75439600-75447400	Strong transcription	Fetal Muscle Trunk	muscle
30	chr16:75439800-75447800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr16:75440400-75447400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
32	chr16:75440600-75448600	Strong transcription	Primary T cells from cord blood	blood
33	chr16:75440600-75448600	Strong transcription	Primary T helper cells fromperipheralblood	blood
34	chr16:75441600-75447400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr16:75442000-75449200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr16:75442000-75449200	Strong transcription	HepG2	liver
37	chr16:75442600-75448000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr16:75442800-75448600	Strong transcription	Monocytes-CD14+_RO01746	blood
39	chr16:75443000-75448000	Strong transcription	Primary T cells fromperipheralblood	blood
40	chr16:75443200-75447400	Strong transcription	Primary B cells from peripheral blood	blood
41	chr16:75443200-75447400	Strong transcription	Osteobl	bone
42	chr16:75443800-75455000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr16:75444000-75464400	Weak transcription	Hela-S3	cervix
44	chr16:75444800-75448600	Strong transcription	Dnd41	blood
45	chr16:75445200-75465000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr16:75445400-75447400	Strong transcription	Colonic Mucosa	Colon
47	chr16:75445600-75449400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr16:75445600-75454800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr16:75446000-75447400	Strong transcription	Thymus	Thymus
50	chr16:75446200-75465200	Weak transcription	Lung	lung

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