Variant report

Variant	rs2161648
Chromosome Location	chr16:75314629-75314630
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:75282717..75287400-chr16:75313290..75317298,5	MCF-7	breast:
2	chr16:75305411..75308006-chr16:75310161..75314701,4	MCF-7	breast:
3	chr16:75311909..75314850-chr16:75324692..75326248,2	MCF-7	breast:
4	chr16:75311251..75314643-chr16:75315165..75318311,4	K562	blood:

Variant related genes	Relation type
ENSG00000050820	Chromatin interaction

Extended variants
information (count: 246 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:235)

rs_ID	r²[population]
rs1011121	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10431974	0.86[ASN][1000 genomes]
rs10459859	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10514393	0.96[CEU][hapmap];0.96[CHB][hapmap];0.87[JPT][hapmap];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10514396	0.93[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10781976	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10871309	0.89[ASN][1000 genomes]
rs10871311	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10871313	0.86[CHB][hapmap]
rs1109341	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1109342	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.84[YRI][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11149812	0.83[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs11149813	0.81[CHB][hapmap];0.80[ASN][1000 genomes]
rs11149814	0.80[ASN][1000 genomes]
rs11149815	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11149818	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11149820	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11149822	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11149824	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11149825	0.86[ASN][1000 genomes]
rs11149828	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11149829	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11149830	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11149831	1.00[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs11149832	1.00[CEU][hapmap];0.87[CHB][hapmap];0.88[YRI][hapmap]
rs11640018	1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs11640218	0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11640674	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11641308	0.95[ASN][1000 genomes]
rs11641311	0.96[ASN][1000 genomes]
rs11641532	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11641801	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11642572	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11642921	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11643410	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11644592	0.86[ASN][1000 genomes]
rs11644639	0.81[ASN][1000 genomes]
rs11645329	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11645691	0.83[CHB][hapmap]
rs11646044	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11646677	0.93[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11646852	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11648176	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11858992	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11860231	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11860284	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11861810	0.80[EUR][1000 genomes]
rs11862095	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11862582	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11862684	0.80[EUR][1000 genomes]
rs11864102	0.86[ASN][1000 genomes]
rs11864587	0.82[ASN][1000 genomes]
rs11865004	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12051111	0.81[ASN][1000 genomes]
rs12051136	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12051326	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12149063	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.89[YRI][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12443834	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12443904	0.86[ASN][1000 genomes]
rs12444589	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.88[YRI][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12449177	0.80[ASN][1000 genomes]
rs12599361	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12917651	1.00[CEU][hapmap];0.87[CHB][hapmap];0.83[YRI][hapmap]
rs12922951	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12924782	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12924920	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12933281	0.96[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap]
rs12935787	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1364077	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1364078	0.92[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1364079	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1424013	0.81[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap]
rs1544810	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1549306	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.83[YRI][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1559339	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs166013	0.95[CHB][hapmap];0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs17685540	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17696696	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.83[YRI][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17696749	0.93[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1808434	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1808435	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1808436	0.86[ASN][1000 genomes]
rs1862706	0.95[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs1895490	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.85[YRI][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2059256	0.92[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2059257	0.83[CHB][hapmap]
rs2113232	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2161684	0.96[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap]
rs2285222	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2285223	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2285224	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2285225	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs247427	0.83[CHB][hapmap]
rs247438	0.83[CHB][hapmap]
rs2865528	0.81[ASN][1000 genomes]
rs2865530	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.92[YRI][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2865531	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.85[YRI][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2903033	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34029337	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34222958	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34296964	0.86[ASN][1000 genomes]
rs34624768	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34673655	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35261357	0.81[ASN][1000 genomes]
rs35263058	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.83[YRI][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35415181	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35552529	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35737321	0.86[ASN][1000 genomes]
rs35937717	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35952313	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3743607	0.91[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs3784935	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3784936	0.83[CHB][hapmap]
rs3851733	0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3851734	0.96[CEU][hapmap];0.86[CHB][hapmap];0.80[EUR][1000 genomes]
rs3851737	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3851738	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3863442	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3863445	0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3863446	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3863447	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4146809	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.92[YRI][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4146810	0.93[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4243111	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4243112	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4558442	0.93[ASN][1000 genomes]
rs4594277	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4638613	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.83[YRI][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4887813	0.81[ASN][1000 genomes]
rs4887814	0.81[ASN][1000 genomes]
rs4887815	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4887816	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4887818	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4887820	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4887821	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4887822	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4887823	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.85[YRI][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4887824	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.89[YRI][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4887829	0.88[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap]
rs4888372	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4888374	0.81[ASN][1000 genomes]
rs4888375	0.81[ASN][1000 genomes]
rs4888376	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4888377	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4888378	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4888379	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4888380	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4888383	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4888385	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4888386	0.96[CEU][hapmap];0.96[CHB][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4888387	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4888388	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.92[YRI][hapmap];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4888389	0.96[CEU][hapmap];0.96[CHB][hapmap];0.91[JPT][hapmap];0.92[YRI][hapmap];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4888390	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4888391	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4888392	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4888393	0.86[CHB][hapmap]
rs4888396	0.83[CHB][hapmap]
rs4888400	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4888403	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4888404	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4888405	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.89[YRI][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4888406	0.86[ASN][1000 genomes]
rs4888407	0.86[ASN][1000 genomes]
rs4888408	0.84[ASN][1000 genomes]
rs4888409	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4888410	0.86[ASN][1000 genomes]
rs4888411	0.83[ASN][1000 genomes]
rs4888412	0.83[ASN][1000 genomes]
rs4888413	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4888414	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4888415	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[YRI][hapmap];0.85[ASN][1000 genomes]
rs4888416	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[YRI][hapmap];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4888418	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4888425	0.93[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap];0.81[YRI][hapmap]
rs4888430	0.80[CEU][hapmap];0.90[CHB][hapmap];0.82[JPT][hapmap]
rs4993969	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.83[YRI][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4993970	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4993971	0.83[CHB][hapmap]
rs56343285	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59686216	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60730309	0.86[ASN][1000 genomes]
rs62059808	0.88[ASN][1000 genomes]
rs62059845	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62059846	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62062564	0.85[ASN][1000 genomes]
rs62062565	0.86[ASN][1000 genomes]
rs62062567	0.85[ASN][1000 genomes]
rs62062568	0.86[ASN][1000 genomes]
rs62062572	0.81[EUR][1000 genomes]
rs6564252	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6564258	0.85[ASN][1000 genomes]
rs6564259	0.81[ASN][1000 genomes]
rs6564261	0.81[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap]
rs71394207	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7184525	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7185640	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7188231	0.86[ASN][1000 genomes]
rs7188604	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.89[YRI][hapmap];0.85[ASN][1000 genomes]
rs7189407	0.82[CHB][hapmap]
rs7194129	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7199132	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.89[YRI][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7200616	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7202567	0.82[EUR][1000 genomes]
rs7203157	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.92[YRI][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7204984	0.93[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap];0.81[YRI][hapmap]
rs7206541	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72787160	0.86[ASN][1000 genomes]
rs7499872	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs766521	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[YRI][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs766522	0.83[CHB][hapmap]
rs8046000	0.86[ASN][1000 genomes]
rs8046109	0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8048527	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8048677	0.83[CHB][hapmap]
rs8048816	0.83[CHB][hapmap]
rs8050059	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8050769	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8051407	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8054586	0.83[CHB][hapmap]
rs8054769	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8055490	0.87[CHB][hapmap];0.82[JPT][hapmap]
rs8055609	0.83[CHB][hapmap]
rs8055974	0.92[CEU][hapmap];0.92[CHB][hapmap];0.84[YRI][hapmap]
rs8056080	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8056236	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8057084	0.81[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap]
rs8057203	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8057535	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8057849	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8060955	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8182132	0.97[ASN][1000 genomes]
rs889446	0.91[CHB][hapmap]
rs977987	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs9922008	1.00[CHB][hapmap];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1061095	chr16:74519718-75407020	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	123 gene(s)	inside rSNPs	diseases
2	nsv532560	chr16:74692406-75411912	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	111 gene(s)	inside rSNPs	diseases
3	nsv916502	chr16:74845880-75732365	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	131 gene(s)	inside rSNPs	diseases
4	nsv833282	chr16:75154171-75330634	Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
5	nsv523405	chr16:75227969-75342846	Transcr. at gene 5' and 3' Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
6	nsv906909	chr16:75236154-75316074	Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
7	nsv906910	chr16:75251299-75316074	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
8	nsv906912	chr16:75252526-75320827	Flanking Active TSS Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
9	nsv931939	chr16:75261354-75765025	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
10	nsv471095	chr16:75269533-75320827	Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	23 gene(s)	inside rSNPs	diseases
11	nsv833283	chr16:75302175-75392308	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs2161648	RP11-252K23.2	cis	lung	GTEx
rs2161648	RP11-252K23.2	cis	Artery Tibial	GTEx
rs2161648	RP11-252K23.2	cis	Esophagus Mucosa	GTEx
rs2161648	RP11-252K23.2	cis	Thyroid	GTEx
rs2161648	CFDP1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:75301000-75325000	Weak transcription	Liver	Liver
2	chr16:75301800-75321800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr16:75302000-75315800	Weak transcription	Fetal Brain Female	brain
4	chr16:75302000-75324000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr16:75306200-75325000	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr16:75306200-75325200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr16:75306400-75321600	Weak transcription	Right Atrium	heart
8	chr16:75307600-75316400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr16:75307600-75316800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr16:75307600-75321600	Weak transcription	Lung	lung
11	chr16:75307800-75318600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr16:75307800-75320400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr16:75307800-75323000	Weak transcription	NHLF	lung
14	chr16:75307800-75325400	Weak transcription	Osteobl	bone
15	chr16:75311600-75321200	Weak transcription	Spleen	Spleen
16	chr16:75312000-75316000	Weak transcription	Fetal Intestine Small	intestine
17	chr16:75312000-75324400	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr16:75312400-75315000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr16:75312400-75317000	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr16:75312400-75317000	Enhancers	HMEC	breast
21	chr16:75312400-75317200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr16:75312600-75316400	Enhancers	NHEK	skin
23	chr16:75312600-75316800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr16:75312800-75314800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr16:75312800-75315200	Enhancers	Fetal Muscle Trunk	muscle
26	chr16:75313000-75315400	Enhancers	Fetal Muscle Leg	muscle
27	chr16:75313200-75315000	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr16:75313400-75324600	Weak transcription	Stomach Smooth Muscle	stomach
29	chr16:75313400-75325200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr16:75313400-75325200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr16:75313600-75316200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr16:75313600-75316200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr16:75313600-75316400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr16:75313600-75318600	Weak transcription	Fetal Stomach	stomach
35	chr16:75313600-75321000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr16:75313600-75321600	Weak transcription	Left Ventricle	heart
37	chr16:75313600-75321800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr16:75313600-75321800	Weak transcription	Gastric	stomach
39	chr16:75313600-75321800	Weak transcription	HUVEC	blood vessel
40	chr16:75313600-75322000	Weak transcription	Fetal Intestine Large	intestine
41	chr16:75313600-75322200	Weak transcription	Adipose Nuclei	Adipose
42	chr16:75313600-75323200	Weak transcription	HepG2	liver
43	chr16:75313600-75323800	Weak transcription	Ovary	ovary
44	chr16:75313600-75325800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr16:75313600-75330400	Weak transcription	Pancreas	Pancrea
46	chr16:75313800-75316000	Weak transcription	Fetal Brain Male	brain
47	chr16:75313800-75322200	Weak transcription	Right Ventricle	heart
48	chr16:75314000-75316200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr16:75314000-75322000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr16:75314000-75325000	Weak transcription	Brain Anterior Caudate	brain

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