Variant report

Variant	rs4888380
Chromosome Location	chr16:75347690-75347691
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:75341957..75345575-chr16:75345642..75348406,3	MCF-7	breast:
2	chr16:75346961..75349343-chr16:75353275..75355911,2	K562	blood:
3	chr16:75291273..75292814-chr16:75345421..75347980,2	MCF-7	breast:

Extended variants
information (count: 276 )
Associated
traits (count: 8 )

rSNPs within LD-proxies of this variant (count:271)

rs_ID	r²[population]
rs100912	0.86[JPT][hapmap]
rs1011121	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1017239	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs10431974	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10459859	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10514393	0.96[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10514396	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10781976	0.96[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];0.91[GIH][hapmap];0.91[JPT][hapmap];0.88[LWK][hapmap];0.88[MKK][hapmap];0.95[TSI][hapmap];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10781977	0.87[CHB][hapmap];0.83[JPT][hapmap]
rs10871308	0.87[CHB][hapmap];0.83[JPT][hapmap]
rs10871309	0.93[ASN][1000 genomes]
rs10871311	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10871313	0.89[JPT][hapmap]
rs1109341	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1109342	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];0.85[MEX][hapmap];0.86[MKK][hapmap];0.98[TSI][hapmap];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11149812	0.86[CHB][hapmap]
rs11149815	0.95[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11149818	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11149820	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11149822	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11149824	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11149825	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11149828	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11149829	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11149830	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11149831	0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11149832	1.00[CEU][hapmap];0.87[CHD][hapmap];0.93[GIH][hapmap];0.87[JPT][hapmap];0.80[LWK][hapmap];0.85[MEX][hapmap];0.89[MKK][hapmap];0.98[TSI][hapmap];0.81[EUR][1000 genomes]
rs11640018	0.91[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs11640218	0.86[ASN][1000 genomes]
rs11640674	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11641308	0.88[ASN][1000 genomes]
rs11641311	0.89[ASN][1000 genomes]
rs11641532	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11641587	0.80[EUR][1000 genomes]
rs11641801	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11642572	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11642921	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11643410	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11644306	0.81[EUR][1000 genomes]
rs11644592	0.89[ASN][1000 genomes]
rs11644639	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11645329	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11645691	0.82[CHB][hapmap]
rs11646044	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11646677	0.96[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11646852	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11648176	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11649638	0.81[EUR][1000 genomes]
rs11858992	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11860231	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11860284	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11861810	0.82[EUR][1000 genomes]
rs11862095	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11862582	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11862684	0.82[EUR][1000 genomes]
rs11862719	0.81[ASN][1000 genomes]
rs11864102	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11864587	0.85[ASN][1000 genomes]
rs11865004	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12051111	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12051136	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12051326	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12149063	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12443834	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12443904	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12444589	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.85[MEX][hapmap];0.86[MKK][hapmap];0.98[TSI][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12445188	0.81[ASN][1000 genomes]
rs12445211	0.81[ASN][1000 genomes]
rs12445813	0.81[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs12599361	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12917651	1.00[CEU][hapmap];0.87[CHD][hapmap];0.87[GIH][hapmap];0.87[JPT][hapmap];0.84[LWK][hapmap];0.85[MEX][hapmap];0.93[MKK][hapmap];0.98[TSI][hapmap]
rs12922951	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12924782	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12924920	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12928036	0.85[JPT][hapmap];0.83[EUR][1000 genomes]
rs12929908	0.80[EUR][1000 genomes]
rs12930768	0.80[EUR][1000 genomes]
rs12933281	0.96[CEU][hapmap];0.81[CHB][hapmap];0.84[CHD][hapmap];0.80[GIH][hapmap];0.95[JPT][hapmap];0.85[MEX][hapmap];0.98[TSI][hapmap];0.80[EUR][1000 genomes]
rs12935787	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1364077	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1364078	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1364079	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1424013	0.82[CEU][hapmap];0.84[CHD][hapmap];0.80[GIH][hapmap];0.91[JPT][hapmap];0.86[MKK][hapmap]
rs1542864	0.83[EUR][1000 genomes]
rs1544810	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1549306	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.88[MKK][hapmap];0.98[TSI][hapmap];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1559339	0.94[ASW][hapmap];0.96[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.91[JPT][hapmap];0.95[LWK][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs166013	0.86[CHB][hapmap];0.86[CHD][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs17685540	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17696696	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.88[MKK][hapmap];0.98[TSI][hapmap];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17696749	0.96[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1808434	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1808435	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1808436	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1862705	0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs1862706	0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1895490	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2059256	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2059257	0.82[CHB][hapmap]
rs2113232	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2161648	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2161684	0.96[CEU][hapmap];0.81[CHB][hapmap];0.84[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];0.80[LWK][hapmap];0.85[MEX][hapmap];0.92[MKK][hapmap];0.98[TSI][hapmap]
rs2285222	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2285223	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2285224	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2285225	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs247427	0.82[CHB][hapmap]
rs247438	0.82[CHB][hapmap];0.83[JPT][hapmap]
rs28558946	0.81[EUR][1000 genomes]
rs2865528	0.85[AFR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2865530	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2865531	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2865532	0.80[ASN][1000 genomes]
rs28655617	0.81[EUR][1000 genomes]
rs2903033	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34021527	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34029337	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34222958	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34296964	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34624768	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34673655	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35214308	0.80[EUR][1000 genomes]
rs35261357	0.85[ASN][1000 genomes]
rs35263058	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];0.85[MEX][hapmap];0.92[MKK][hapmap];0.98[TSI][hapmap];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35409574	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35415181	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35552529	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35737321	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35937717	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35952313	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3743607	0.83[CHB][hapmap];0.87[CHD][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs3743609	0.83[EUR][1000 genomes]
rs3784935	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3784936	0.82[CHB][hapmap];0.83[JPT][hapmap]
rs3851733	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3851734	0.96[CEU][hapmap];0.87[CHB][hapmap];0.91[GIH][hapmap];0.87[JPT][hapmap];0.94[MEX][hapmap];0.82[MKK][hapmap];0.98[TSI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3851735	0.82[CHB][hapmap];0.83[JPT][hapmap]
rs3851737	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3851738	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3851740	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3863442	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3863445	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3863446	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3863447	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4146809	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];0.85[MEX][hapmap];0.84[MKK][hapmap];0.98[TSI][hapmap];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4146810	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4243111	0.94[ASW][hapmap];0.96[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];0.91[GIH][hapmap];0.90[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4243112	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4536500	0.87[CHB][hapmap];0.83[JPT][hapmap]
rs4558442	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4594277	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4638613	0.96[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];0.85[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs468079	0.83[JPT][hapmap]
rs4887815	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4887816	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4887818	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4887820	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4887821	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4887822	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4887823	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4887824	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4887829	0.92[CEU][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap];0.81[EUR][1000 genomes]
rs4888372	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4888376	1.00[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4888377	0.94[CHB][hapmap];0.89[JPT][hapmap]
rs4888378	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.98[TSI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4888379	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4888383	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4888385	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4888386	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4888387	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4888388	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4888389	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4888390	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4888391	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4888392	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4888393	0.86[CHB][hapmap]
rs4888396	0.82[CHB][hapmap];0.83[JPT][hapmap]
rs4888400	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4888403	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4888404	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4888405	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];0.85[MEX][hapmap];0.85[MKK][hapmap];0.98[TSI][hapmap];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4888406	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4888407	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4888408	0.88[ASN][1000 genomes]
rs4888409	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4888410	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4888411	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4888412	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4888413	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4888414	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4888415	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4888416	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4888418	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4888425	0.96[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap];0.80[EUR][1000 genomes]
rs4888426	0.81[EUR][1000 genomes]
rs4888427	0.83[EUR][1000 genomes]
rs4888430	0.91[JPT][hapmap];0.83[YRI][hapmap]
rs4888432	0.85[GIH][hapmap];0.81[JPT][hapmap]
rs4993969	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.90[MEX][hapmap];0.88[MKK][hapmap];0.98[TSI][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4993970	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4993971	0.82[CHB][hapmap]
rs56004344	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56343285	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57113150	0.81[EUR][1000 genomes]
rs59465235	0.82[EUR][1000 genomes]
rs59686216	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60730309	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62059808	0.93[ASN][1000 genomes]
rs62059845	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62059846	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62062564	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62062565	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62062567	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62062568	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62062572	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6564252	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6564258	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6564259	0.85[ASN][1000 genomes]
rs6564261	0.82[CEU][hapmap];0.84[CHD][hapmap];0.87[GIH][hapmap];0.91[JPT][hapmap];0.86[MKK][hapmap]
rs67409275	0.85[AFR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs71394207	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7184525	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7185640	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7188231	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7188604	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7189407	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs7191890	0.83[EUR][1000 genomes]
rs7194129	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7199062	0.83[EUR][1000 genomes]
rs7199132	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7200053	0.80[EUR][1000 genomes]
rs7200616	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7202284	0.83[JPT][hapmap]
rs7202567	0.83[EUR][1000 genomes]
rs7203157	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7204984	0.96[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap]
rs7206541	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7206665	0.83[EUR][1000 genomes]
rs72787160	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7499872	0.85[AFR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs766521	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];0.85[MEX][hapmap];0.86[MKK][hapmap];0.98[TSI][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs766522	0.82[CHB][hapmap];0.83[JPT][hapmap]
rs8046000	0.90[ASN][1000 genomes]
rs8046109	0.88[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.86[YRI][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8048527	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8048677	0.82[CHB][hapmap];0.83[JPT][hapmap]
rs8048816	0.82[CHB][hapmap];0.83[JPT][hapmap]
rs8050059	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.91[MKK][hapmap];0.98[TSI][hapmap];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8050662	0.82[CHB][hapmap];0.83[JPT][hapmap]
rs8050769	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8051407	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8053632	0.83[JPT][hapmap]
rs8054586	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs8054769	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8055490	0.91[JPT][hapmap]
rs8055609	0.81[CHB][hapmap]
rs8055974	0.96[CEU][hapmap];0.83[CHB][hapmap];0.87[JPT][hapmap]
rs8056080	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8056236	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8057084	0.82[CEU][hapmap];0.85[CHD][hapmap];0.82[GIH][hapmap];0.91[JPT][hapmap];0.89[MEX][hapmap];0.86[MKK][hapmap]
rs8057203	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8057535	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8057849	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8060955	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8182132	0.88[ASN][1000 genomes]
rs889446	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs977987	0.81[ASW][hapmap];0.81[CHD][hapmap];0.85[GIH][hapmap];0.91[JPT][hapmap];0.93[LWK][hapmap];0.81[MKK][hapmap];0.85[YRI][hapmap]
rs9922008	0.90[CHB][hapmap];0.90[JPT][hapmap];0.97[ASN][1000 genomes]
rs9934007	0.87[CHB][hapmap];0.83[JPT][hapmap]
rs999675	0.83[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1061095	chr16:74519718-75407020	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	123 gene(s)	inside rSNPs	diseases
2	nsv532560	chr16:74692406-75411912	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	111 gene(s)	inside rSNPs	diseases
3	nsv916502	chr16:74845880-75732365	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	131 gene(s)	inside rSNPs	diseases
4	nsv931939	chr16:75261354-75765025	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
5	nsv833283	chr16:75302175-75392308	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:8)

SNP	Gene	Cis/trans	Tissue	Source
rs4888380	RP11-252K23.2	cis	Artery Tibial	GTEx
rs4888380	RP11-252K23.2	cis	lung	GTEx
rs4888380	RP11-252K23.2	cis	Esophagus Mucosa	GTEx
rs4888380	RP11-252K23.2	cis	Thyroid	GTEx
rs4888380	CFDP1	cis	parietal	SCAN
rs4888380	DHODH	cis	cerebellum	SCAN
rs4888380	CFDP1	Cis_1M	lymphoblastoid	RTeQTL
rs4888380	CFDP1	cis	cerebellum	SCAN

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:75317400-75358000	Weak transcription	Fetal Brain Male	brain
2	chr16:75332600-75352000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr16:75338800-75349400	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr16:75338800-75349800	Weak transcription	Primary B cells from peripheral blood	blood
5	chr16:75338800-75351200	Weak transcription	Right Ventricle	heart
6	chr16:75338800-75426400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr16:75339200-75358000	Weak transcription	Brain Germinal Matrix	brain
8	chr16:75339400-75411800	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr16:75340000-75353200	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr16:75340200-75353000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr16:75340200-75353200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr16:75340400-75349600	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr16:75340400-75351000	Weak transcription	GM12878-XiMat	blood
14	chr16:75340400-75353200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr16:75340400-75374800	Weak transcription	Aorta	Aorta
16	chr16:75340600-75347800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr16:75340600-75352600	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr16:75340600-75352800	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr16:75340600-75353000	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr16:75340600-75354200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr16:75340800-75351000	Weak transcription	Left Ventricle	heart
22	chr16:75340800-75353600	Weak transcription	Fetal Lung	lung
23	chr16:75340800-75357800	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr16:75340800-75373400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr16:75341000-75351000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr16:75341000-75353000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr16:75341000-75353000	Weak transcription	HSMM	muscle
28	chr16:75341000-75354000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr16:75341000-75354400	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr16:75341800-75364600	Weak transcription	Hela-S3	cervix
31	chr16:75342200-75351000	Weak transcription	Spleen	Spleen
32	chr16:75342200-75351800	Weak transcription	Duodenum Mucosa	Duodenum
33	chr16:75342200-75353200	Weak transcription	HMEC	breast
34	chr16:75342200-75357200	Weak transcription	Placenta	Placenta
35	chr16:75342200-75381200	Weak transcription	Esophagus	oesophagus
36	chr16:75342400-75353400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr16:75342400-75354000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr16:75342600-75351800	Weak transcription	Liver	Liver
39	chr16:75342600-75353400	Weak transcription	NHEK	skin
40	chr16:75342800-75353200	Weak transcription	Fetal Thymus	thymus
41	chr16:75343000-75354400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr16:75343400-75349600	Weak transcription	Dnd41	blood
43	chr16:75343400-75351000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr16:75343600-75351000	Weak transcription	Fetal Muscle Trunk	muscle
45	chr16:75344000-75376400	Weak transcription	Gastric	stomach
46	chr16:75344200-75351000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr16:75344200-75351000	Weak transcription	Fetal Muscle Leg	muscle
48	chr16:75344200-75351400	Weak transcription	Fetal Kidney	kidney
49	chr16:75344200-75352000	Weak transcription	Fetal Heart	heart
50	chr16:75344200-75353200	Weak transcription	HSMMtube	muscle

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Variant report

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