Variant report

Variant	rs57113150
Chromosome Location	chr16:75331043-75331044
allele	-/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:75297645..75299628-chr16:75329949..75331499,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000050820	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11641532	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs1559339	0.82[AFR][1000 genomes]
rs34029337	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs35937717	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs4243111	0.82[AFR][1000 genomes]
rs4888372	0.83[AFR][1000 genomes]
rs4888379	0.81[EUR][1000 genomes]
rs4888380	0.81[EUR][1000 genomes]
rs8057535	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1061095	chr16:74519718-75407020	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	123 gene(s)	inside rSNPs	diseases
2	nsv532560	chr16:74692406-75411912	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	111 gene(s)	inside rSNPs	diseases
3	nsv916502	chr16:74845880-75732365	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	131 gene(s)	inside rSNPs	diseases
4	nsv523405	chr16:75227969-75342846	Transcr. at gene 5' and 3' Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
5	nsv931939	chr16:75261354-75765025	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
6	nsv833283	chr16:75302175-75392308	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:75315000-75335600	Weak transcription	Psoas Muscle	Psoas
2	chr16:75317000-75335600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr16:75317400-75358000	Weak transcription	Fetal Brain Male	brain
4	chr16:75320800-75339000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr16:75321800-75337600	Weak transcription	A549	lung
6	chr16:75322000-75332200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr16:75322000-75337600	Strong transcription	Fetal Intestine Large	intestine
8	chr16:75322400-75338000	Weak transcription	Stomach Mucosa	stomach
9	chr16:75322800-75332200	Weak transcription	Small Intestine	intestine
10	chr16:75322800-75335600	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr16:75323000-75331400	Weak transcription	GM12878-XiMat	blood
12	chr16:75323000-75337400	Weak transcription	K562	blood
13	chr16:75323200-75335800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
14	chr16:75323200-75337800	Strong transcription	Rectal Mucosa Donor 29	rectum
15	chr16:75323400-75332800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr16:75323400-75338200	Weak transcription	NH-A	brain
17	chr16:75323600-75339000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr16:75323600-75339000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr16:75323600-75339200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr16:75323800-75333200	Strong transcription	HUES48 Cell Line	embryonic stem cell
21	chr16:75323800-75336600	Strong transcription	Duodenum Mucosa	Duodenum
22	chr16:75323800-75337800	Strong transcription	Sigmoid Colon	Sigmoid Colon
23	chr16:75323800-75338400	Strong transcription	Dnd41	blood
24	chr16:75323800-75339000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
25	chr16:75324000-75338400	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr16:75324000-75338800	Strong transcription	Primary T helper cells fromperipheralblood	blood
27	chr16:75324200-75332200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr16:75324600-75337800	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chr16:75324800-75340200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr16:75325000-75335000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr16:75325000-75339600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr16:75325200-75331200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr16:75325200-75331800	Strong transcription	HepG2	liver
34	chr16:75325200-75334800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr16:75325200-75338800	Strong transcription	Primary T cells from cord blood	blood
36	chr16:75325200-75340800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
37	chr16:75325600-75332200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr16:75325800-75332200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr16:75326200-75338800	Strong transcription	Primary T helper cells PMA-I stimulated	--
40	chr16:75326200-75339000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr16:75327000-75333600	Weak transcription	Fetal Brain Female	brain
42	chr16:75327000-75334800	Weak transcription	Colon Smooth Muscle	Colon
43	chr16:75327000-75335200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr16:75327000-75335200	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr16:75327000-75335200	Weak transcription	Gastric	stomach
46	chr16:75327000-75339200	Weak transcription	Fetal Kidney	kidney
47	chr16:75327400-75331800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr16:75327400-75334600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr16:75327400-75339200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr16:75327600-75332200	Weak transcription	Rectal Smooth Muscle	rectum

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