Variant report

Variant	rs17685540
Chromosome Location	chr16:75323840-75323841
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:75323194..75324994-chr16:75337931..75340370,2	MCF-7	breast:
2	chr16:75322113..75324158-chr16:75324406..75326106,2	MCF-7	breast:
3	chr16:75283878..75286370-chr16:75323655..75326662,3	MCF-7	breast:
4	chr16:75322651..75324699-chr16:75331151..75332861,2	MCF-7	breast:
5	chr16:75298337..75302151-chr16:75321880..75325464,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000050820	Chromatin interaction
ENSG00000153774	Chromatin interaction

Extended variants
information (count: 242 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:235)

rs_ID	r²[population]
rs1011121	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10431974	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10459859	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10514393	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10514396	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10781976	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10871309	0.91[ASN][1000 genomes]
rs10871311	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10871312	0.80[EUR][1000 genomes]
rs1109341	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1109342	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11149812	0.81[ASN][1000 genomes]
rs11149813	0.81[ASN][1000 genomes]
rs11149814	0.81[ASN][1000 genomes]
rs11149815	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11149818	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11149820	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11149822	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11149824	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11149825	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11149828	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11149829	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11149830	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11149831	0.87[ASN][1000 genomes]
rs11149832	0.83[EUR][1000 genomes]
rs11149833	0.82[EUR][1000 genomes]
rs11640018	0.99[ASN][1000 genomes]
rs11640218	0.81[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs11640674	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11641308	0.93[ASN][1000 genomes]
rs11641311	0.94[ASN][1000 genomes]
rs11641532	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11641587	0.82[EUR][1000 genomes]
rs11641801	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11642572	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11642921	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11643410	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11644592	0.88[ASN][1000 genomes]
rs11644639	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11644741	0.82[EUR][1000 genomes]
rs11645329	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11646044	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11646677	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11646852	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11648176	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11858992	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11860231	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11860284	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11861810	0.84[EUR][1000 genomes]
rs11862095	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11862582	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11862684	0.84[EUR][1000 genomes]
rs11864102	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11864587	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11865004	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12051111	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12051136	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12051326	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12149063	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12443834	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12443904	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12444589	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12445726	0.82[EUR][1000 genomes]
rs12449177	0.81[ASN][1000 genomes]
rs12599361	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12917651	0.82[EUR][1000 genomes]
rs12922951	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12924782	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12924920	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12927562	0.82[EUR][1000 genomes]
rs12928898	0.82[EUR][1000 genomes]
rs12929673	0.82[EUR][1000 genomes]
rs12929908	0.82[EUR][1000 genomes]
rs12930452	0.82[EUR][1000 genomes]
rs12930768	0.82[EUR][1000 genomes]
rs12933281	0.82[EUR][1000 genomes]
rs12935787	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1364077	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1364078	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1364079	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1544810	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1549306	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1559339	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs166013	0.83[ASN][1000 genomes]
rs17696696	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17696749	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1808434	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1808435	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1808436	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1862706	0.94[ASN][1000 genomes]
rs1895490	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2059256	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2113232	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2161648	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2161684	0.82[EUR][1000 genomes]
rs2285222	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2285223	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2285224	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2285225	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2865528	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2865530	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2865531	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2903033	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34021527	0.82[EUR][1000 genomes]
rs34029337	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34222958	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34296964	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34624768	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34673655	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34996006	0.81[EUR][1000 genomes]
rs35209155	0.82[EUR][1000 genomes]
rs35214308	0.82[EUR][1000 genomes]
rs35261357	0.83[ASN][1000 genomes]
rs35263058	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35409574	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35415181	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35552529	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35737321	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35787595	0.82[EUR][1000 genomes]
rs35937717	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35952313	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3743607	0.92[ASN][1000 genomes]
rs3784935	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3851733	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3851734	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3851737	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3851738	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3851740	0.81[ASN][1000 genomes]
rs3863442	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3863445	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3863446	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3863447	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4146809	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4146810	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4243111	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4243112	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4558442	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4594277	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4638613	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4887813	0.80[ASN][1000 genomes]
rs4887814	0.82[ASN][1000 genomes]
rs4887815	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4887816	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4887818	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4887820	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4887821	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4887822	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4887823	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4887824	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4888372	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4888374	0.81[ASN][1000 genomes]
rs4888375	0.81[ASN][1000 genomes]
rs4888376	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4888378	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4888379	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4888380	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4888383	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4888385	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4888386	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4888387	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4888388	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4888389	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4888390	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4888391	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4888392	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4888400	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4888403	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4888404	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4888405	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4888406	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4888407	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4888408	0.86[ASN][1000 genomes]
rs4888409	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4888410	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4888411	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4888412	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4888413	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4888414	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4888415	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4888416	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4888418	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4888425	0.82[EUR][1000 genomes]
rs4888426	0.83[EUR][1000 genomes]
rs4993969	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4993970	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56004344	0.82[EUR][1000 genomes]
rs56343285	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59155720	0.81[EUR][1000 genomes]
rs59686216	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60730309	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62059808	0.90[ASN][1000 genomes]
rs62059845	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62059846	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62062564	0.87[ASN][1000 genomes]
rs62062565	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62062567	0.87[ASN][1000 genomes]
rs62062568	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62062572	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6564252	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6564258	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6564259	0.83[ASN][1000 genomes]
rs67409275	0.81[EUR][1000 genomes]
rs71394207	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7184525	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7185640	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7188231	0.88[ASN][1000 genomes]
rs7188604	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7194129	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7199132	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7200053	0.82[EUR][1000 genomes]
rs7200616	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7202567	0.85[EUR][1000 genomes]
rs7202596	0.80[EUR][1000 genomes]
rs7203157	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7204984	0.82[EUR][1000 genomes]
rs7206541	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72787160	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7499872	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs766521	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8046000	0.88[ASN][1000 genomes]
rs8046109	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8048527	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8050059	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8050769	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8051407	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8054769	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8055974	0.82[EUR][1000 genomes]
rs8056080	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8056236	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8057203	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8057535	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8057849	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8060955	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8182132	0.94[ASN][1000 genomes]
rs9922008	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1061095	chr16:74519718-75407020	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	123 gene(s)	inside rSNPs	diseases
2	nsv532560	chr16:74692406-75411912	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	111 gene(s)	inside rSNPs	diseases
3	nsv916502	chr16:74845880-75732365	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	131 gene(s)	inside rSNPs	diseases
4	nsv833282	chr16:75154171-75330634	Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
5	nsv523405	chr16:75227969-75342846	Transcr. at gene 5' and 3' Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
6	nsv931939	chr16:75261354-75765025	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
7	nsv833283	chr16:75302175-75392308	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs17685540	CFDP1	Cis_1M	lymphoblastoid	RTeQTL
rs17685540	RP11-252K23.2	cis	Thyroid	GTEx
rs17685540	RP11-252K23.2	cis	Artery Tibial	GTEx
rs17685540	RP11-252K23.2	cis	lung	GTEx
rs17685540	RP11-252K23.2	cis	Esophagus Mucosa	GTEx

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:75301000-75325000	Weak transcription	Liver	Liver
2	chr16:75302000-75324000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr16:75306200-75325000	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr16:75306200-75325200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr16:75307800-75325400	Weak transcription	Osteobl	bone
6	chr16:75312000-75324400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr16:75313400-75324600	Weak transcription	Stomach Smooth Muscle	stomach
8	chr16:75313400-75325200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr16:75313400-75325200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr16:75313600-75325800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr16:75313600-75330400	Weak transcription	Pancreas	Pancrea
12	chr16:75314000-75325000	Weak transcription	Brain Anterior Caudate	brain
13	chr16:75314800-75325400	Weak transcription	Colon Smooth Muscle	Colon
14	chr16:75315000-75335600	Weak transcription	Psoas Muscle	Psoas
15	chr16:75315200-75325200	Weak transcription	Brain Hippocampus Middle	brain
16	chr16:75315200-75326600	Weak transcription	Brain Substantia Nigra	brain
17	chr16:75315400-75325400	Weak transcription	Aorta	Aorta
18	chr16:75316800-75325000	Weak transcription	Brain Germinal Matrix	brain
19	chr16:75316800-75325200	Weak transcription	Primary B cells from cord blood	blood
20	chr16:75317000-75325000	Weak transcription	Brain Angular Gyrus	brain
21	chr16:75317000-75325800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr16:75317000-75335600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr16:75317200-75325000	Weak transcription	Fetal Brain Female	brain
24	chr16:75317200-75325200	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr16:75317400-75358000	Weak transcription	Fetal Brain Male	brain
26	chr16:75318600-75330200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr16:75318800-75325000	Weak transcription	Brain Cingulate Gyrus	brain
28	chr16:75319200-75324000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr16:75320200-75325200	Weak transcription	Primary hematopoietic stem cells	blood
30	chr16:75320800-75339000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr16:75321000-75326800	Strong transcription	Fetal Intestine Small	intestine
32	chr16:75321200-75326800	Strong transcription	Fetal Stomach	stomach
33	chr16:75321200-75329000	Strong transcription	Cortex derived primary cultured neurospheres	brain
34	chr16:75321400-75324400	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr16:75321600-75324000	Enhancers	Fetal Heart	heart
36	chr16:75321600-75324200	Enhancers	Left Ventricle	heart
37	chr16:75321600-75324200	Enhancers	Skeletal Muscle Male	skeletal muscle
38	chr16:75321600-75330600	Strong transcription	Fetal Lung	lung
39	chr16:75321800-75324400	Enhancers	HUVEC	blood vessel
40	chr16:75321800-75324600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr16:75321800-75337600	Weak transcription	A549	lung
42	chr16:75322000-75325400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr16:75322000-75332200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr16:75322000-75337600	Strong transcription	Fetal Intestine Large	intestine
45	chr16:75322200-75324200	Enhancers	Adipose Nuclei	Adipose
46	chr16:75322200-75325800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr16:75322200-75325800	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr16:75322200-75326800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr16:75322200-75328600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr16:75322400-75325600	Weak transcription	Gastric	stomach

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