Variant report

Variant	rs10305317
Chromosome Location	chr17:38614972-38614973
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:38608476..38611175-chr17:38612841..38616006,3	K562	blood:
2	chr17:38609401..38611943-chr17:38614441..38615996,2	MCF-7	breast:
3	chr17:38554912..38556460-chr17:38614451..38616397,2	MCF-7	breast:
4	chr17:38614375..38615947-chr17:38623291..38624942,2	K562	blood:
5	chr17:38599579..38602497-chr17:38613595..38616074,3	K562	blood:

Variant related genes	Relation type
ENSG00000141753	Chromatin interaction
ENSG00000131747	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10305316	0.96[AFR][1000 genomes]
rs10305318	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833445	chr17:38466474-38637969	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38605400-38616800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr17:38606400-38616400	Weak transcription	K562	blood
3	chr17:38606600-38617400	Weak transcription	Small Intestine	intestine
4	chr17:38607000-38615000	Genic enhancers	Liver	Liver
5	chr17:38607600-38618400	Genic enhancers	NHLF	lung
6	chr17:38607800-38615400	Strong transcription	HUVEC	blood vessel
7	chr17:38608600-38615400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr17:38608600-38615600	Strong transcription	Dnd41	blood
9	chr17:38608800-38615800	Genic enhancers	NHDF-Ad	bronchial
10	chr17:38608800-38616400	Genic enhancers	Osteobl	bone
11	chr17:38609000-38615000	Strong transcription	Rectal Mucosa Donor 29	rectum
12	chr17:38609200-38616000	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr17:38610400-38618600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr17:38610800-38615400	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr17:38611000-38616400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr17:38611200-38615200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr17:38612000-38615000	Genic enhancers	Muscle Satellite Cultured Cells	--
18	chr17:38612000-38616200	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr17:38612200-38615800	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr17:38612200-38616600	Genic enhancers	Fetal Stomach	stomach
21	chr17:38612400-38615000	Genic enhancers	Fetal Muscle Trunk	muscle
22	chr17:38612400-38615000	Genic enhancers	Fetal Muscle Leg	muscle
23	chr17:38612400-38615000	Genic enhancers	Right Ventricle	heart
24	chr17:38612400-38615400	Genic enhancers	Adipose Nuclei	Adipose
25	chr17:38612400-38619200	Enhancers	Right Atrium	heart
26	chr17:38612600-38615400	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr17:38612600-38615600	Genic enhancers	Lung	lung
28	chr17:38612600-38616600	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr17:38612800-38615200	Enhancers	Fetal Brain Male	brain
30	chr17:38613000-38616800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr17:38613000-38617200	Genic enhancers	A549	lung
32	chr17:38613200-38615000	Enhancers	Aorta	Aorta
33	chr17:38613200-38615400	Enhancers	Fetal Thymus	thymus
34	chr17:38613200-38615400	Genic enhancers	Placenta Amnion	Placenta Amnion
35	chr17:38613200-38615600	Enhancers	HSMMtube	muscle
36	chr17:38613200-38616200	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr17:38613400-38615200	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr17:38613400-38615600	Transcr. at gene 5' and 3'	Stomach Smooth Muscle	stomach
39	chr17:38613600-38615400	Weak transcription	Primary B cells from peripheral blood	blood
40	chr17:38613600-38615400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr17:38613600-38615400	Enhancers	HMEC	breast
42	chr17:38613800-38615000	Enhancers	Fetal Intestine Large	intestine
43	chr17:38613800-38615200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr17:38613800-38615200	Enhancers	Esophagus	oesophagus
45	chr17:38613800-38615400	Enhancers	iPS-18 Cell Line	embryonic stem cell
46	chr17:38613800-38615400	Enhancers	Gastric	stomach
47	chr17:38613800-38615600	Enhancers	ES-I3 Cell Line	embryonic stem cell
48	chr17:38613800-38616200	Weak transcription	Primary B cells from cord blood	blood
49	chr17:38613800-38616400	Enhancers	Fetal Kidney	kidney
50	chr17:38613800-38616600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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