Variant report

Variant	rs10305318
Chromosome Location	chr17:38615427-38615428
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:38608476..38611175-chr17:38612841..38616006,3	K562	blood:
2	chr17:38608604..38610880-chr17:38615164..38617497,2	K562	blood:
3	chr17:38609401..38611943-chr17:38614441..38615996,2	MCF-7	breast:
4	chr17:38554912..38556460-chr17:38614451..38616397,2	MCF-7	breast:
5	chr17:38614375..38615947-chr17:38623291..38624942,2	K562	blood:
6	chr17:38615426..38618640-chr17:38688722..38692627,3	MCF-7	breast:
7	chr17:38599579..38602497-chr17:38613595..38616074,3	K562	blood:

Variant related genes	Relation type
ENSG00000131747	Chromatin interaction
ENSG00000141753	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10305316	0.96[AFR][1000 genomes]
rs10305317	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833445	chr17:38466474-38637969	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38605400-38616800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr17:38606400-38616400	Weak transcription	K562	blood
3	chr17:38606600-38617400	Weak transcription	Small Intestine	intestine
4	chr17:38607600-38618400	Genic enhancers	NHLF	lung
5	chr17:38608600-38615600	Strong transcription	Dnd41	blood
6	chr17:38608800-38615800	Genic enhancers	NHDF-Ad	bronchial
7	chr17:38608800-38616400	Genic enhancers	Osteobl	bone
8	chr17:38609200-38616000	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr17:38610400-38618600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr17:38611000-38616400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr17:38612000-38616200	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr17:38612200-38615800	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr17:38612200-38616600	Genic enhancers	Fetal Stomach	stomach
14	chr17:38612400-38619200	Enhancers	Right Atrium	heart
15	chr17:38612600-38615600	Genic enhancers	Lung	lung
16	chr17:38612600-38616600	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr17:38613000-38616800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr17:38613000-38617200	Genic enhancers	A549	lung
19	chr17:38613200-38615600	Enhancers	HSMMtube	muscle
20	chr17:38613200-38616200	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr17:38613400-38615600	Transcr. at gene 5' and 3'	Stomach Smooth Muscle	stomach
22	chr17:38613800-38615600	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr17:38613800-38616200	Weak transcription	Primary B cells from cord blood	blood
24	chr17:38613800-38616400	Enhancers	Fetal Kidney	kidney
25	chr17:38613800-38616600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr17:38613800-38619800	Enhancers	Rectal Smooth Muscle	rectum
27	chr17:38614000-38616000	Enhancers	Left Ventricle	heart
28	chr17:38614000-38621000	Enhancers	Ovary	ovary
29	chr17:38614000-38623400	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr17:38614200-38616800	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr17:38614200-38629200	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr17:38614400-38615600	Enhancers	Stomach Mucosa	stomach
33	chr17:38614400-38619600	Enhancers	Colon Smooth Muscle	Colon
34	chr17:38614400-38620200	Enhancers	Placenta	Placenta
35	chr17:38614600-38616400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
36	chr17:38614600-38617800	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr17:38614600-38618400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr17:38614600-38619600	Enhancers	Duodenum Smooth Muscle	Duodenum
39	chr17:38614600-38620600	Enhancers	HUES6 Cell Line	embryonic stem cell
40	chr17:38614800-38616000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr17:38614800-38616200	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr17:38614800-38617400	Weak transcription	Colonic Mucosa	Colon
43	chr17:38614800-38618000	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr17:38614800-38620400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr17:38615000-38615800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr17:38615000-38615800	Enhancers	NHEK	skin
47	chr17:38615000-38616200	Strong transcription	Muscle Satellite Cultured Cells	--
48	chr17:38615000-38617400	Weak transcription	Fetal Intestine Large	intestine
49	chr17:38615000-38618200	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr17:38615000-38618800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links