Variant report

Variant	rs10305668
Chromosome Location	chr1:150832094-150832095
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:150830796..150832309-chr1:150837350..150839035,2	MCF-7	breast:
2	chr1:150830646..150832634-chr1:150847170..150848850,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10788793	1.00[AMR][1000 genomes]
rs10788796	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11204732	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13376166	1.00[ASN][1000 genomes]
rs267727	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs267728	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28498299	1.00[ASN][1000 genomes]
rs4970975	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6587538	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6661777	1.00[ASN][1000 genomes]
rs7526690	1.00[AMR][1000 genomes]
rs7533914	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs796407	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2829859	chr1:150608894-150937329	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv872418	chr1:150683512-150860471	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv1001897	chr1:150743271-151241600	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
4	nsv535158	chr1:150743271-151241600	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
5	nsv872420	chr1:150786038-150847647	Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv1010875	chr1:150796816-150845827	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150807400-150847000	Weak transcription	Colonic Mucosa	Colon
2	chr1:150808800-150847000	Weak transcription	Psoas Muscle	Psoas
3	chr1:150809200-150846800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr1:150809600-150846000	Weak transcription	Pancreas	Pancrea
5	chr1:150810400-150846600	Weak transcription	Fetal Heart	heart
6	chr1:150812000-150847000	Weak transcription	Gastric	stomach
7	chr1:150812200-150834000	Weak transcription	Brain Angular Gyrus	brain
8	chr1:150812400-150840600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr1:150812400-150842000	Weak transcription	Esophagus	oesophagus
10	chr1:150812400-150846800	Weak transcription	Fetal Kidney	kidney
11	chr1:150812600-150846000	Weak transcription	Small Intestine	intestine
12	chr1:150812600-150846800	Weak transcription	Rectal Smooth Muscle	rectum
13	chr1:150814600-150833400	Weak transcription	Hela-S3	cervix
14	chr1:150814800-150839600	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr1:150815400-150842400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr1:150815400-150846800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr1:150815600-150838000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr1:150820600-150846800	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr1:150821200-150846600	Weak transcription	Aorta	Aorta
20	chr1:150821200-150846600	Weak transcription	Brain Hippocampus Middle	brain
21	chr1:150821200-150846800	Weak transcription	Brain Anterior Caudate	brain
22	chr1:150821200-150848600	Weak transcription	Spleen	Spleen
23	chr1:150822400-150846800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr1:150825000-150846600	Weak transcription	K562	blood
25	chr1:150825000-150848000	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr1:150825200-150846600	Weak transcription	Fetal Brain Female	brain
27	chr1:150825200-150846800	Weak transcription	Brain Substantia Nigra	brain
28	chr1:150825200-150846800	Weak transcription	Fetal Brain Male	brain
29	chr1:150825400-150833800	Weak transcription	Primary hematopoietic stem cells	blood
30	chr1:150825400-150846000	Weak transcription	NHLF	lung
31	chr1:150825400-150846200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr1:150825600-150846800	Weak transcription	HSMMtube	muscle
33	chr1:150826000-150847800	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr1:150826400-150845800	Weak transcription	HepG2	liver
35	chr1:150826600-150833400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr1:150826600-150846800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr1:150827000-150832600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr1:150827000-150833600	Weak transcription	GM12878-XiMat	blood
39	chr1:150827000-150840200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr1:150827000-150841600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr1:150827000-150848200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr1:150827400-150846600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr1:150827600-150840400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr1:150827600-150840600	Weak transcription	Placenta	Placenta
45	chr1:150827800-150847000	Weak transcription	A549	lung
46	chr1:150828000-150847000	Weak transcription	Stomach Smooth Muscle	stomach
47	chr1:150828400-150833200	Weak transcription	Fetal Muscle Leg	muscle
48	chr1:150828400-150833600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr1:150828400-150833600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr1:150828400-150845200	Weak transcription	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links